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SLC6A7 solute carrier family 6 member 7 [ Homo sapiens (human) ]

Gene ID: 6534, updated on 18-Aug-2020

Summary

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Official Symbol
SLC6A7provided by HGNC
Official Full Name
solute carrier family 6 member 7provided by HGNC
Primary source
HGNC:HGNC:11054
See related
Ensembl:ENSG00000011083 MIM:606205
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PROT
Summary
This gene is a member of the gamma-aminobutyric acid (GABA) neurotransmitter gene family and encodes a high-affinity mammalian brain L-proline transporter protein. This transporter protein differs from other sodium-dependent plasma membrane carriers by its pharmacological specificity, kinetic properties, and ionic requirements. [provided by RefSeq, Jul 2008]
Expression
Biased expression in brain (RPKM 4.6), small intestine (RPKM 0.9) and 2 other tissues See more
Orthologs
mouse all

Genomic context

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See SLC6A7 in Genome Data Viewer
Location:
5q32
Exon count:
16
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (150190062..150211072)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (149569520..149590635)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene CSF1R promoter E1 Neighboring gene platelet derived growth factor receptor beta Neighboring gene caudal type homeobox 1 Neighboring gene calcium/calmodulin dependent protein kinase II alpha Neighboring gene arylsulfatase family member I

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A new association between polymorphisms of the SLC6A7 gene in the chromosome 5q31-32 region and asthma. Kim JH, et al. J Hum Genet, 2010 Jun. PMID 20431603
  2. Mammalian brain-specific L-proline transporter. Neuronal localization of mRNA and enrichment of transporter protein in synaptic plasma membranes. Velaz-Faircloth M, et al. J Biol Chem, 1995 Jun 30. PMID 7797577
  3. Human brain-specific L-proline transporter: molecular cloning, functional expression, and chromosomal localization of the gene in human and mouse genomes. Shafqat S, et al. Mol Pharmacol, 1995 Aug. PMID 7651355
  4. Genetical genomic determinants of alcohol consumption in rats and humans. Tabakoff B, et al. BMC Biol, 2009 Oct 27. PMID 19874574, Free PMC Article
  5. L-type voltage-dependent calcium channel alpha subunit 1C is a novel candidate gene associated with secondary hyperparathyroidism: an application of haplotype-based analysis for multiple linked single nucleotide polymorphisms. Yokoyama K, et al. Nephron Clin Pract, 2010. PMID 20424473

See all (11) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. these findings suggest that SLC6A7 could be a susceptible gene for asthma.
    Title: A new association between polymorphisms of the SLC6A7 gene in the chromosome 5q31-32 region and asthma.
  2. Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)
    Title: Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.
  3. Observational study of gene-disease association. (HuGE Navigator)
    Title: A new association between polymorphisms of the SLC6A7 gene in the chromosome 5q31-32 region and asthma.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
L-proline transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
proline:sodium symporter activity TAS
Traceable Author Statement
more info
  
Process Evidence Code Pubs
neurotransmitter transport IEA
Inferred from Electronic Annotation
more info
  
proline transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
proline transport TAS
Traceable Author Statement
more info
 PubMed 
sodium ion transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
transport IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
Component Evidence Code Pubs
integral component of plasma membrane TAS
Traceable Author Statement
more info
 PubMed 
membrane TAS
Traceable Author Statement
more info
 PubMed 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
plasma membrane TAS
Traceable Author Statement
more info
  

General protein information

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Preferred Names
sodium-dependent proline transporter
Names
brain-specific L-proline transporter
solute carrier family 6 (neurotransmitter transporter, L-proline), member 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_014228.5 → NP_055043.2  sodium-dependent proline transporter

    See identical proteins and their annotated locations for NP_055043.2

    Status: VALIDATED

    Source sequence(s)
    AC005895, AK096607, BC069631, BM682856
    Consensus CDS
    CCDS4305.1
    UniProtKB/Swiss-Prot
    Q99884
    Related
    ENSP00000230671.2, ENST00000230671.7
    Conserved Domains (1) summary
    cd11500
    Location:37 → 581
    SLC6sbd_PROT; Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    150190062..150211072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017009767.1 → XP_016865256.1  sodium-dependent proline transporter isoform X1

  2. XM_017009769.2 → XP_016865258.1  sodium-dependent proline transporter isoform X2

    Conserved Domains (1) summary
    cl00456
    Location:1 → 537
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  3. XM_024446190.1 → XP_024301958.1  sodium-dependent proline transporter isoform X2

    Conserved Domains (1) summary
    cl00456
    Location:1 → 537
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  4. XM_017009770.2 → XP_016865259.1  sodium-dependent proline transporter isoform X3

  5. XM_017009768.2 → XP_016865257.1  sodium-dependent proline transporter isoform X2

    Conserved Domains (1) summary
    cl00456
    Location:1 → 537
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

RNA

  1. XR_001742210.1 RNA Sequence

  2. XR_001742211.1 RNA Sequence

  3. XR_001742212.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q99884.2 GenPept UniProtKB/Swiss-Prot:Q99884

Gene LinkOut

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