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RRN3P2 RRN3 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 653390, updated on 1-Jun-2020

Summary

Official Symbol
RRN3P2provided by HGNC
Official Full Name
RRN3 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:37619
See related
Ensembl:ENSG00000103472
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in bone marrow (RPKM 9.9), lymph node (RPKM 6.2) and 25 other tissues See more

Genomic context

See RRN3P2 in Genome Data Viewer
Location:
16p11.2
Exon count:
17
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (29074842..29116718)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (29086163..29128039)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene linker for activation of T cells Neighboring gene nuclear pore complex interacting protein family, member B10, pseudogene Neighboring gene uncharacterized LOC101928215 Neighboring gene uncharacterized LOC100129184 Neighboring gene uncharacterized LOC107984832 Neighboring gene RRN3P2-SNX29P2 intergenic nontranscribed DNase I hypersensitive site-defined enhancer

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • RNA polymerase I transcription factor homolog pseudogene 2
  • RRN3 RNA polymerase I transcription factor homolog pseudogene
  • RRN3 homolog, RNA polymerase I transcription factor pseudogene 2
  • RRN3-like protein 1

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA polymerase I core binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase I general transcription initiation factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
transcription initiation from RNA polymerase I promoter IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003369.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009093, AK225670, DC420905
    Related
    ENST00000564580.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    29074842..29116718
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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