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GOLGA8J golgin A8 family member J [ Homo sapiens (human) ]

Gene ID: 653073, updated on 23-Nov-2023

Summary

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Official Symbol
GOLGA8Jprovided by HGNC
Official Full Name
golgin A8 family member Jprovided by HGNC
Primary source
HGNC:HGNC:38650
See related
Ensembl:ENSG00000179938 AllianceGenome:HGNC:38650
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be involved in Golgi organization. Predicted to be active in Golgi cis cisterna; Golgi cisterna membrane; and cis-Golgi network. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in thyroid (RPKM 10.8), testis (RPKM 10.1) and 24 other tissues See more
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Genomic context

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See GOLGA8J in Genome Data Viewer
Location:
15q13.2
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (30082955..30096690)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (27874675..27888411)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (30375158..30388893)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene non-SMC condensin I complex subunit G pseudogene 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:30318078-30318268 Neighboring gene synaptogyrin 2 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:30375577-30376156 Neighboring gene RNA, 7SL, cytoplasmic 673, pseudogene Neighboring gene dynamin 1 pseudogene 28 Neighboring gene U8 small nucleolar RNA Neighboring gene ULK4 pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Analysis of the DNA sequence and duplication history of human chromosome 15. Zody MC, et al. Nature, 2006 Mar 30. PMID 16572171
  2. E3 ubiquitin ligase RNF123 targets lamin B1 and lamin-binding proteins. Khanna R, et al. FEBS J, 2018 Jun. PMID 29676528
  3. Integrative oncogene-dependency mapping identifies RIT1 vulnerabilities and synergies in lung cancer. Vichas A, et al. Nat Commun, 2021 Aug 9. PMID 34373451, Free PMC Article
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  5. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • FLJ52611

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in Golgi organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi cis cisterna IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in Golgi cisterna membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cis-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
golgin subfamily A member 8J
Names
Golgin subfamily A member 8-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001282472.2 → NP_001269401.1  golgin subfamily A member 8J

    See identical proteins and their annotated locations for NP_001269401.1

    Status: VALIDATED

    Source sequence(s)
    AC120045, DB054802, DB098469
    Consensus CDS
    CCDS61574.1
    UniProtKB/Swiss-Prot
    A6NMD2, H3BRU0
    UniProtKB/TrEMBL
    A0A1B0GVY7
    Related
    ENSP00000456401.1, ENST00000567927.2
    Conserved Domains (1) summary
    pfam15070
    Location:226 → 621
    GOLGA2L5; Putative golgin subfamily A member 2-like protein 5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    30082955..30096690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011521950.3 → XP_011520252.1  golgin subfamily A member 8J isoform X3

    See identical proteins and their annotated locations for XP_011520252.1

    Conserved Domains (2) summary
    COG1196
    Location:86 → 325
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam15070
    Location:226 → 449
    GOLGA2L5; Putative golgin subfamily A member 2-like protein 5

  2. XM_006720651.4 → XP_006720714.1  golgin subfamily A member 8J isoform X1

    See identical proteins and their annotated locations for XP_006720714.1

    UniProtKB/TrEMBL
    A0A1B0GVY7
    Conserved Domains (1) summary
    pfam15070
    Location:213 → 608
    GOLGA2L5; Putative golgin subfamily A member 2-like protein 5

  3. XM_047432963.1 → XP_047288919.1  golgin subfamily A member 8J isoform X2

    UniProtKB/Swiss-Prot
    A6NC78

RNA

  1. XR_002957674.2 RNA Sequence

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_011332701.1 Reference GRCh38.p14 PATCHES

    Range
    2255675..2269410
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054331807.1 → XP_054187782.1  golgin subfamily A member 8J isoform X3

  2. XM_054331805.1 → XP_054187780.1  golgin subfamily A member 8J isoform X1

    UniProtKB/TrEMBL
    A0A1B0GVY7

  3. XM_054331806.1 → XP_054187781.1  golgin subfamily A member 8J isoform X2

    UniProtKB/Swiss-Prot
    A6NC78

RNA

  1. XR_008485735.1 RNA Sequence

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_012132920.1 Reference GRCh38.p14 PATCHES

    Range
    70634..84357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187660.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    2368159..2381894
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054330035.1 → XP_054186010.1  golgin subfamily A member 8J isoform X3

  2. XM_054330033.1 → XP_054186008.1  golgin subfamily A member 8J isoform X1

    UniProtKB/TrEMBL
    A0A1B0GVY7

  3. XM_054330034.1 → XP_054186009.1  golgin subfamily A member 8J isoform X2

    UniProtKB/Swiss-Prot
    A6NC78

RNA

  1. XR_008485669.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    27874675..27888411
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054378655.1 → XP_054234630.1  golgin subfamily A member 8J isoform X4

  2. XM_054378656.1 → XP_054234631.1  golgin subfamily A member 8J isoform X3

  3. XM_054378654.1 → XP_054234629.1  golgin subfamily A member 8J isoform X1

    UniProtKB/TrEMBL
    A0A1B0GVY7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6NMD2.3 GenPept UniProtKB/Swiss-Prot:A6NMD2

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