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Ash achaete-scute homolog [ Tribolium castaneum (red flour beetle) ]

Gene ID: 652954, updated on 2-Apr-2025
Gene symbol
Ash
Gene description
achaete-scute homolog
Locus tag
TcasGA2_TC008433
See related
EnsemblRapid:GeneID_652954
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Also known as
Tc-ash
Orthologs
all
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See Ash in Genome Data Viewer
Location:
chromosome: 9
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 9 NC_087402.1 (10362848..10363609)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG4 NC_007419.2 (10195452..10196213)

Chromosome 9 - NC_087402.1Genomic Context describing neighboring genes Neighboring gene monocarboxylate transporter 14 Neighboring gene monocarboxylate transporter 1 Neighboring gene microRNA mir-6015 Neighboring gene uncharacterized LOC135267064 Neighboring gene uncharacterized LOC661206 Neighboring gene uncharacterized LOC661319

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. The expression and function of the achaete-scute genes in Tribolium castaneum reveals conservation and variation in neural pattern formation and cell fate specification. Wheeler SR, et al. Development, 2003 Sep. PMID 12900453
  2. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  3. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
achaete-scute homolog
Names
AUGUSTUS-3.0.2_08433
Achaete-scute complex protein T3-like Protein
GLEAN_08433

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039448.1 → NP_001034537.1  achaete-scute homolog

    See identical proteins and their annotated locations for NP_001034537.1

    Status: PROVISIONAL

    Source sequence(s)
    AY321476
    UniProtKB/TrEMBL
    D2A1R2, Q6VXY1
    Related
    NP_001034537.1, NM_001039448.1
    Conserved Domains (1) summary
    smart00353
    Location:98 → 157
    HLH; helix loop helix domain

RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087402.1 Reference icTriCast1.1 Primary Assembly

    Range
    10362848..10363609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials