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klf17 Kruppel-like factor 17 [ Danio rerio (zebrafish) ]

Gene ID: 65238, updated on 19-Jun-2021

Summary

Official Symbol
klf17provided by ZNC
Official Full Name
Kruppel-like factor 17provided by ZNC
Primary source
ZFIN:ZDB-GENE-010129-1
See related
Ensembl:ENSDARG00000038792
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
bik; klf; klf4; biklf; klf4b; id:ibd51; etID46628.; id:ibd5109; wu:fc09b11; zgc:109839; ik:tdsubc_1b8; ik:tdsubc_1e5; xx:tdsubc_1b8; xx:tdsubc_1e5; ik:tdsubc_1e12; xx:tdsubc_1e12
Orthologs
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Genomic context

See klf17 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (33326537..33328688)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (33343319..33345470)
103 previous assembly Zv9 (GCF_000002035.4) 2 NC_007113.5 (33044412..33046563)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108179926 Neighboring gene ring finger protein 220a Neighboring gene solute carrier family 6 member 9 Neighboring gene coiled-coil domain containing 24 Neighboring gene zgc:113531

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleus IC
Inferred by Curator
more info
 

General protein information

Preferred Names
Krueppel-like factor 17
Names
Kruppel-like factor 4
Kruppel-like factor 4b
blood island-enriched Kruppel-li
blood island-enriched Kruppel-like factor
etID46628.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131723.1NP_571798.1  Krueppel-like factor 17

    See identical proteins and their annotated locations for NP_571798.1

    Status: PROVISIONAL

    Source sequence(s)
    AF262978
    UniProtKB/TrEMBL
    Q9DFS2
    Related
    ENSDARP00000056654.4, ENSDART00000056655.5
    Conserved Domains (4) summary
    COG5048
    Location:248393
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:331350
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:326350
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:372397
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    33326537..33328688
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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