Format

Send to:

Choose Destination

ctbp2a C-terminal binding protein 2a [ Danio rerio (zebrafish) ]

Gene ID: 65230, updated on 17-Nov-2020

Summary

Official Symbol
ctbp2aprovided by ZNC
Official Full Name
C-terminal binding protein 2aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-010130-2
See related
Ensembl:ENSDARG00000044062
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
r; ctbp; ctbp2; fe05b01; wu:fb96g03; wu:fe05b01; wu:fk19e02
Annotation information
Annotation category: partial on reference assembly
Orthologs

Genomic context

See ctbp2a in Genome Data Viewer
Location:
chromosome: 17
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (8596943..8692722, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (8439763..8535542, complement)
103 previous assembly Zv9 (GCF_000002035.4) 17 NC_007128.5 (8442421..8538200, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene frizzled class receptor 3b Neighboring gene keratinocyte associated protein 3 Neighboring gene testis expressed 36 Neighboring gene erythroid differentiation regulatory factor 1

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Clone Names

  • MGC191960

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
NAD binding IEA
Inferred from Electronic Annotation
more info
 
oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 
transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
camera-type eye development IMP
Inferred from Mutant Phenotype
more info
PubMed 
clustering of voltage-gated calcium channels IGI
Inferred from Genetic Interaction
more info
PubMed 
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 
regulation of gliogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of gliogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of melanocyte differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
synapse assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
synapse assembly involved in innervation IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
C-terminal-binding protein 2a
Names
C-terminal binding protein 2
riba
ribeye a

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195491.1NP_001182420.1  C-terminal-binding protein 2a isoform 1

    See identical proteins and their annotated locations for NP_001182420.1

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AY878349
    UniProtKB/TrEMBL
    Q5BU19
    Related
    ENSDARP00000124211.1, ENSDART00000148504.3
    Conserved Domains (3) summary
    COG0111
    Location:7931103
    SerA; Phosphoglycerate dehydrogenase or related dehydrogenase [Coenzyme transport and metabolism, General function prediction only]
    cd05299
    Location:7771095
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor
    pfam01698
    Location:416486
    FLO_LFY; Floricaula / Leafy protein
  2. NM_131715.1NP_571790.1  C-terminal-binding protein 2a isoform 2

    See identical proteins and their annotated locations for NP_571790.1

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, 3' UTR, and coding region, compared to variant 1, resulting in a protein that is shorter and has distinct N- and C-termini, compared to isoform 1.
    Source sequence(s)
    AB032416
    UniProtKB/TrEMBL
    Q9DEG6
    Related
    ENSDARP00000123977.1, ENSDART00000148931.3
    Conserved Domains (2) summary
    COG0111
    Location:50360
    SerA; Phosphoglycerate dehydrogenase or related dehydrogenase [Coenzyme transport and metabolism, General function prediction only]
    cd05299
    Location:34352
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    8596943..8692722 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center