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ctbp1 C-terminal binding protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 65229, updated on 17-Nov-2020

Summary

Official Symbol
ctbp1provided by ZNC
Official Full Name
C-terminal binding protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-010130-1
See related
Ensembl:ENSDARG00000057007
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
CtBP; wu:fi43a; wu:fi43a11
Orthologs

Genomic context

See ctbp1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (21820087..21846181)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (21522842..21548936)
103 previous assembly Zv9 (GCF_000002035.4) 14 NC_007125.5 (22823354..22849448)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene lysine (K)-specific demethylase 2Ab Neighboring gene ankyrin repeat domain 13 family, member D Neighboring gene spondin 2a, extracellular matrix protein Neighboring gene TBC1 domain family, member 10C

Genomic regions, transcripts, and products

Bibliography

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
NAD binding IEA
Inferred from Electronic Annotation
more info
 
oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 
transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 
retinoic acid receptor signaling pathway IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
C-terminal-binding protein 1; C-terminal binding protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131714.2NP_571789.2  C-terminal-binding protein 1

    See identical proteins and their annotated locations for NP_571789.2

    Status: PROVISIONAL

    Source sequence(s)
    BC045280
    UniProtKB/TrEMBL
    Q7ZU55
    Related
    ENSDARP00000107990.1, ENSDART00000122739.3
    Conserved Domains (2) summary
    COG0111
    Location:61362
    SerA; Phosphoglycerate dehydrogenase or related dehydrogenase [Coenzyme transport and metabolism, General function prediction only]
    cd05299
    Location:34352
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    21820087..21846181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005173133.2XP_005173190.1  C-terminal binding protein 1 isoform X1

    Conserved Domains (2) summary
    COG1052
    Location:100409
    LdhA; Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, Coenzyme transport and metabolism, General function prediction only]
    cd05299
    Location:83401
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394904.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    25084..49762
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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