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Scamp2 secretory carrier membrane protein 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 65168, updated on 6-May-2021

Summary

Official Symbol
Scamp2provided by RGD
Official Full Name
secretory carrier membrane protein 2provided by RGD
Primary source
RGD:68348
See related
Ensembl:ENSRNOG00000019136
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
may be involved in membrane trafficking and endocytosis [RGD, Feb 2006]
Expression
Biased expression in Kidney (RPKM 238.1), Thymus (RPKM 141.6) and 9 other tissues See more
Orthologs
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Genomic context

See Scamp2 in Genome Data Viewer
Location:
8q24
Exon count:
10
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (57965612..57992248)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (62341584..62368215)

Chromosome 8 - NC_051343.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 219, member B Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene mannose phosphate isomerase Neighboring gene unc-51 like kinase 3 Neighboring gene complexin 3

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Homology

Clone Names

  • MGC94592

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in endocytosis TAS
Traceable Author Statement
more info
PubMed 
involved_in intracellular protein transport TAS
Traceable Author Statement
more info
PubMed 
involved_in protein transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein transport ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane TAS
Traceable Author Statement
more info
PubMed 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
is_active_in recycling endosome membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in recycling endosome membrane ISO
Inferred from Sequence Orthology
more info
 
is_active_in trans-Golgi network membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in trans-Golgi network membrane ISO
Inferred from Sequence Orthology
more info
 
located_in transport vesicle IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
secretory carrier-associated membrane protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_023955.1NP_076445.1  secretory carrier-associated membrane protein 2

    See identical proteins and their annotated locations for NP_076445.1

    Status: PROVISIONAL

    Source sequence(s)
    BC085862
    UniProtKB/TrEMBL
    Q5U2U4
    Related
    ENSRNOP00000059185.2, ENSRNOT00000066923.2
    Conserved Domains (1) summary
    pfam04144
    Location:117293
    SCAMP; SCAMP family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051343.1 Reference mRatBN7.2 Primary Assembly

    Range
    57965612..57992248
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017595894.2XP_017451383.1  secretory carrier-associated membrane protein 2 isoform X1

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