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Rps8 ribosomal protein S8 [ Rattus norvegicus (Norway rat) ]

Gene ID: 65136, updated on 2-Oct-2018

Summary

Official Symbol
Rps8provided by RGD
Official Full Name
ribosomal protein S8provided by RGD
Primary source
RGD:61910
See related
Ensembl:ENSRNOG00000054626
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
ribosomal protein subunit [RGD, Feb 2006]
Expression
Biased expression in Spleen (RPKM 3609.3), Thymus (RPKM 3037.8) and 9 other tissues See more
Orthologs

Genomic context

See Rps8 in Genome Data Viewer
Location:
5q36
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (136020941..136023511, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 5 NC_005104.3 (139813893..139816579, complement)

Chromosome 5 - NC_005104.4Genomic Context describing neighboring genes Neighboring gene Tctex1 domain containing 4 Neighboring gene polo-like kinase 3 Neighboring gene bestrophin 4 Neighboring gene kinesin family member 2C Neighboring gene armadillo-like helical domain containing 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytosol ISO
Inferred from Sequence Orthology
more info
 
cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic small ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
ribonucleoprotein complex ISO
Inferred from Sequence Orthology
more info
 
ribonucleoprotein complex ISS
Inferred from Sequence or Structural Similarity
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_031706.1NP_113894.1  40S ribosomal protein S8

    See identical proteins and their annotated locations for NP_113894.1

    Status: PROVISIONAL

    Source sequence(s)
    X06423
    UniProtKB/Swiss-Prot
    P62243
    UniProtKB/TrEMBL
    B2RYR8
    Related
    ENSRNOP00000074753.1, ENSRNOT00000081747.1
    Conserved Domains (1) summary
    PTZ00148
    Location:1206
    PTZ00148; 40S ribosomal protein S8; Provisional

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005104.4 Reference Rnor_6.0 Primary Assembly

    Range
    136020941..136023511 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000073.1 Alternate Rn_Celera

    Range
    129151937..129154507 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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