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Arl6ip4 ADP-ribosylation factor-like 6 interacting protein 4 [ Mus musculus (house mouse) ]

Gene ID: 65105, updated on 5-Mar-2024

Summary

Official Symbol
Arl6ip4provided by MGI
Official Full Name
ADP-ribosylation factor-like 6 interacting protein 4provided by MGI
Primary source
MGI:MGI:1929500
See related
Ensembl:ENSMUSG00000029404 AllianceGenome:MGI:1929500
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Aip-4; Srp25
Summary
Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Is expressed in embryo. Orthologous to human ARL6IP4 (ADP ribosylation factor like GTPase 6 interacting protein 4). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 41.0), liver E14 (RPKM 31.2) and 28 other tissues See more
Orthologs
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Genomic context

See Arl6ip4 in Genome Data Viewer
Location:
5 F; 5 63.39 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (124254171..124256258)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (124116108..124118195)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene 16001 Neighboring gene 2-oxoglutarate and iron-dependent oxygenase domain containing 2 Neighboring gene phosphatidylinositol transfer protein, membrane-associated 2 Neighboring gene predicted gene, 52788 Neighboring gene predicted gene, 57733

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ADP-ribosylation factor-like protein 6-interacting protein 4
Names
ADP-ribosylation-like factor 6 interacting protein 4
ARL-6-interacting protein 4
SRp25 nuclear protein
splicing factor SRrp37

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_144509.2NP_653092.1  ADP-ribosylation factor-like protein 6-interacting protein 4

    See identical proteins and their annotated locations for NP_653092.1

    Status: PROVISIONAL

    Source sequence(s)
    AC113474
    Consensus CDS
    CCDS19673.1
    UniProtKB/Swiss-Prot
    Q9JM93, Q9WUG8
    Related
    ENSMUSP00000031351.5, ENSMUST00000031351.11
    Conserved Domains (1) summary
    pfam10500
    Location:24227
    SR-25; Nuclear RNA-splicing-associated protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    124254171..124256258
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)