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KRI1 KRI1 homolog [ Homo sapiens (human) ]

Gene ID: 65095, updated on 3-May-2020

Summary

Official Symbol
KRI1provided by HGNC
Official Full Name
KRI1 homologprovided by HGNC
Primary source
HGNC:HGNC:25769
See related
Ensembl:ENSG00000129347
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This gene overlaps with the gene for cysteine endopeptidase AUT-like 4 in a head-to-tail orientation. [provided by RefSeq, Jul 2008]
Expression
Ubiquitous expression in testis (RPKM 16.4), lymph node (RPKM 12.7) and 25 other tissues See more
Orthologs

Genomic context

See KRI1 in Genome Data Viewer
Location:
19p13.2
Exon count:
19
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (10553085..10566031, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (10663761..10676702, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene autophagy related 4D cysteine peptidase Neighboring gene RNA, U7 small nuclear 140 pseudogene Neighboring gene microRNA 1238 Neighboring gene cyclin dependent kinase inhibitor 2D Neighboring gene adaptor related protein complex 1 subunit mu 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ12949

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA binding HDA PubMed 
Component Evidence Code Pubs
90S preribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleolus IDA
Inferred from Direct Assay
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_023008.5NP_075384.4  protein KRI1 homolog

    Status: VALIDATED

    Source sequence(s)
    BC002890, BC112251, BM676050, DA438802
    Consensus CDS
    CCDS12242.1
    Related
    ENSP00000320917.9, ENST00000312962.12
    Conserved Domains (2) summary
    pfam05178
    Location:323408
    Kri1; KRI1-like family
    pfam12936
    Location:498586
    Kri1_C; KRI1-like family C-terminal

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    10553085..10566031 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011528190.2XP_011526492.1  protein KRI1 homolog isoform X1

    Conserved Domains (2) summary
    pfam05178
    Location:211296
    Kri1; KRI1-like family
    pfam12936
    Location:386474
    Kri1_C; KRI1-like family C-terminal

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_178159.1: Suppressed sequence

    Description
    NM_178159.1: This RefSeq was permanently suppressed because it contains the wrong CDS. If the correct start site was annotated, then it would be a nonsense-mediated mRNA decay (NMD) candidate.
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