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SLC26A10 solute carrier family 26 member 10 [ Homo sapiens (human) ]

Gene ID: 65012, updated on 23-Nov-2021

Summary

Official Symbol
SLC26A10provided by HGNC
Official Full Name
solute carrier family 26 member 10provided by HGNC
Primary source
HGNC:HGNC:14470
See related
Ensembl:ENSG00000135502
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in brain (RPKM 4.8), endometrium (RPKM 3.5) and 22 other tissues See more
Orthologs
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Genomic context

See SLC26A10 in Genome Data Viewer
Location:
12q13.3
Exon count:
16
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (57619527..57626151)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (58013310..58019934)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor 25 Neighboring gene deltex E3 ubiquitin ligase 3 Neighboring gene uncharacterized LOC101927583 Neighboring gene beta-1,4-N-acetyl-galactosaminyltransferase 1 Neighboring gene ribosomal protein L13a pseudogene 23 Neighboring gene OS9 endoplasmic reticulum lectin

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

HIV-1 interactions

Replication interactions

Interaction Pubs
Knockdown of solute carrier family 26, member 10 (SLC26A10) by siRNA enhances the early stages of HIV-1 replication in HeLa-CD4 cells infected with viral pseudotypes HIV89.6R and HIV8.2N PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ32854

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables anion:anion antiporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables bicarbonate transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables chloride transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables oxalate transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables secondary active sulfate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
enables sulfate transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in bicarbonate transport IEA
Inferred from Electronic Annotation
more info
 
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
involved_in oxalate transport IEA
Inferred from Electronic Annotation
more info
 
involved_in sulfate transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in basolateral plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_166678.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025165
    Related
    ENST00000661867.1
  2. NR_166679.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025165

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    57619527..57626151
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001018084.1: Suppressed sequence

    Description
    NM_001018084.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
  2. NM_133489.2: Suppressed sequence

    Description
    NM_133489.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.
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