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CCDC71 coiled-coil domain containing 71 [ Homo sapiens (human) ]

Gene ID: 64925, updated on 18-Aug-2020

Summary

Official Symbol
CCDC71provided by HGNC
Official Full Name
coiled-coil domain containing 71provided by HGNC
Primary source
HGNC:HGNC:25760
See related
Ensembl:ENSG00000177352
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 10.7), ovary (RPKM 10.4) and 25 other tissues See more
Orthologs

Genomic context

See CCDC71 in Genome Data Viewer
Location:
3p21.31
Exon count:
2
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (49162535..49166331, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (49199968..49203785, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene CRISPRi-validated cis-regulatory element chr3.2093 Neighboring gene laminin subunit beta 2 pseudogene 1 Neighboring gene kelch domain containing 8B Neighboring gene chromosome 3 open reading frame 84

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
coiled-coil domain-containing protein 71
Names
2600016J21Rik

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_022903.4NP_075054.3  coiled-coil domain-containing protein 71

    See identical proteins and their annotated locations for NP_075054.3

    Status: VALIDATED

    Source sequence(s)
    AK022862, BC035516, DA613715
    Consensus CDS
    CCDS2790.1
    UniProtKB/Swiss-Prot
    Q8IV32
    Related
    ENSP00000319006.6, ENST00000321895.7
    Conserved Domains (1) summary
    pfam15374
    Location:8461
    CCDC71L; Coiled-coil domain-containing protein 71L

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    49162535..49166331 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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