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ARMCX5 armadillo repeat containing X-linked 5 [ Homo sapiens (human) ]

Gene ID: 64860, updated on 18-Nov-2020

Summary

Official Symbol
ARMCX5provided by HGNC
Official Full Name
armadillo repeat containing X-linked 5provided by HGNC
Primary source
HGNC:HGNC:25772
See related
Ensembl:ENSG00000125962 MIM:301047
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GASP5
Expression
Ubiquitous expression in thyroid (RPKM 7.2), prostate (RPKM 6.6) and 25 other tissues See more
Orthologs

Genomic context

See ARMCX5 in Genome Data Viewer
Location:
Xq22.1
Exon count:
6
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (102599206..102604159)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (101854096..101859087)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene nuclear RNA export factor 5 pseudogene Neighboring gene forkhead box N3 pseudogene 1 Neighboring gene ARMCX5-GPRASP2 readthrough Neighboring gene nuclear RNA export factor 4 pseudogene Neighboring gene H3 histone pseudogene 45 Neighboring gene G protein-coupled receptor associated sorting protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Readthrough ARMCX5-GPRASP2

Readthrough gene: ARMCX5-GPRASP2, Included gene: GPRASP1, Included gene: BHLHB9, Included gene: GPRASP2, Included gene: LINC00630

Homology

Clone Names

  • FLJ12969, FLJ13382, DKFZp686A22185

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
armadillo repeat-containing X-linked protein 5

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_016347.1 RefSeqGene

    Range
    5348..9992
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001168478.2NP_001161950.1  armadillo repeat-containing X-linked protein 5

    See identical proteins and their annotated locations for NP_001161950.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1-6 all encode the same protein.
    Source sequence(s)
    AL537480, BC064983
    Consensus CDS
    CCDS14500.1
    UniProtKB/Swiss-Prot
    Q6P1M9
    Related
    ENSP00000474720.1, ENST00000604957.1
    Conserved Domains (1) summary
    pfam04826
    Location:300552
    Arm_2; Armadillo-like
  2. NM_001168479.2NP_001161951.1  armadillo repeat-containing X-linked protein 5

    See identical proteins and their annotated locations for NP_001161951.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1-6 all encode the same protein.
    Source sequence(s)
    AK096692, BC000792, BI765968
    Consensus CDS
    CCDS14500.1
    UniProtKB/Swiss-Prot
    Q6P1M9
    Conserved Domains (1) summary
    pfam04826
    Location:300552
    Arm_2; Armadillo-like
  3. NM_001168480.2NP_001161952.1  armadillo repeat-containing X-linked protein 5

    See identical proteins and their annotated locations for NP_001161952.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Variants 1-6 all encode the same protein.
    Source sequence(s)
    AK096692, BC000792
    Consensus CDS
    CCDS14500.1
    UniProtKB/Swiss-Prot
    Q6P1M9
    Related
    ENSP00000246174.2, ENST00000246174.6
    Conserved Domains (1) summary
    pfam04826
    Location:300552
    Arm_2; Armadillo-like
  4. NM_001168482.2NP_001161954.1  armadillo repeat-containing X-linked protein 5

    See identical proteins and their annotated locations for NP_001161954.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) differs in the 5' UTR compared to variant 1. Variants 1-6 all encode the same protein.
    Source sequence(s)
    BC064983, BX352705
    Consensus CDS
    CCDS14500.1
    UniProtKB/Swiss-Prot
    Q6P1M9
    Conserved Domains (1) summary
    pfam04826
    Location:300552
    Arm_2; Armadillo-like
  5. NM_001168485.2NP_001161957.1  armadillo repeat-containing X-linked protein 5

    See identical proteins and their annotated locations for NP_001161957.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. Variants 1-6 all encode the same protein.
    Source sequence(s)
    AK096692, BC064983, DN991222
    Consensus CDS
    CCDS14500.1
    UniProtKB/Swiss-Prot
    Q6P1M9
    Conserved Domains (1) summary
    pfam04826
    Location:300552
    Arm_2; Armadillo-like
  6. NM_022838.4NP_073749.2  armadillo repeat-containing X-linked protein 5

    See identical proteins and their annotated locations for NP_073749.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1-6 all encode the same protein.
    Source sequence(s)
    BC064983
    Consensus CDS
    CCDS14500.1
    UniProtKB/Swiss-Prot
    Q6P1M9
    Related
    ENSP00000361827.1, ENST00000372742.1
    Conserved Domains (1) summary
    pfam04826
    Location:300552
    Arm_2; Armadillo-like

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    102599206..102604159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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