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OCLNP1 OCLN pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 647859, updated on 13-Mar-2020

Summary

Official Symbol
OCLNP1provided by HGNC
Official Full Name
OCLN pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:53916
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in thyroid (RPKM 25.8), lung (RPKM 15.9) and 21 other tissues See more

Genomic context

See OCLNP1 in Genome Data Viewer
Location:
5q13.2
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (71074203..71093070, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (70370030..70388897, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112267942 Neighboring gene NLR family apoptosis inhibitory protein Neighboring gene NAIP promoter region Neighboring gene general transcription factor IIH subunit 2 Neighboring gene small nucleolar RNA, C/D box 13B-2 Neighboring gene NAIP pseudogene 4 Neighboring gene cadherin 12 pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026578.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC044797

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    71074203..71093070 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NW_003315917.2 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    1004449..1023336 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_006176.1: Suppressed sequence

    Description
    NG_006176.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
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