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ASCL5 achaete-scute family bHLH transcription factor 5 [ Homo sapiens (human) ]

Gene ID: 647219, updated on 23-Nov-2021

Summary

Official Symbol
ASCL5provided by HGNC
Official Full Name
achaete-scute family bHLH transcription factor 5provided by HGNC
Primary source
HGNC:HGNC:33169
See related
Ensembl:ENSG00000232237
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ASH-5; bHLHa47
Orthologs
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Genomic context

See ASCL5 in Genome Data Viewer
Location:
1q32.1
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (201113943..201127184, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (201083071..201096312, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101929305 Neighboring gene Sharpr-MPRA regulatory region 14143 Neighboring gene calcium voltage-gated channel subunit alpha1 S Neighboring gene transmembrane protein 9 Neighboring gene immunoglobulin like and fibronectin type III domain containing 1

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in cellular_component ND
No biological Data available
more info
 
located_in chromatin ISA
Inferred from Sequence Alignment
more info
 

General protein information

Preferred Names
achaete-scute homolog 5
Names
achaete-scute complex homolog 5
class A basic helix-loop-helix protein 47

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001270601.2NP_001257530.1  achaete-scute homolog 5

    Status: VALIDATED

    Source sequence(s)
    AL139159
    Consensus CDS
    CCDS59202.1
    UniProtKB/TrEMBL
    M0R2M9
    Related
    ENSP00000472681.1, ENST00000449188.3
    Conserved Domains (1) summary
    smart00353
    Location:89141
    HLH; helix loop helix domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    201113943..201127184 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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