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FAM220BP family with sequence similarity 220 member B, pseudogene [ Homo sapiens (human) ]

Gene ID: 647044, updated on 13-May-2022

Summary

Official Symbol
FAM220BPprovided by HGNC
Official Full Name
family with sequence similarity 220 member B, pseudogeneprovided by HGNC
Gene description
Putative SIPAR-like protein C9orf51
Primary source
HGNC:HGNC:23678
See related
AllianceGenome:HGNC:23678
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C9orf51
Summary
Predicted to enable STAT family protein binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II and protein dephosphorylation. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

See FAM220BP in Genome Data Viewer
Location:
9p13.1
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (38526662..38528814)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (38550862..38553014)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (38526659..38528811)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376042 Neighboring gene vomeronasal 1 receptor 48 pseudogene Neighboring gene cytochrome P450 family 4 subfamily F member 33, pseudogene Neighboring gene family with sequence similarity 95 member C Neighboring gene ankyrin repeat domain 18A Neighboring gene sorting nexin 18 pseudogene 3

Genomic regions, transcripts, and products

General gene information

Markers

Other Names

  • Putative SIPAR-like protein C9orf51

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables STAT family protein binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein dephosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_041772.1 

    Range
    101..2253
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    38526662..38528814
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    38550862..38553014
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)