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LINC00598 long intergenic non-protein coding RNA 598 [ Homo sapiens (human) ]

Gene ID: 646982, updated on 23-Nov-2021

Summary

Official Symbol
LINC00598provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 598provided by HGNC
Primary source
HGNC:HGNC:42770
See related
Ensembl:ENSG00000215483 MIM:619008
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
lncFOXO1
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC00598 in Genome Data Viewer
Location:
13q14.11
Exon count:
8
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (40347132..40481006, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (40921269..41055143, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene ribosomal protein L17 pseudogene 51 Neighboring gene RNY3 pseudogene 9 Neighboring gene LINC00598 intron ENCODE-defined enhancer Neighboring gene RN7SK pseudogene 2 Neighboring gene forkhead box O1 Neighboring gene ring finger protein, LIM domain interacting pseudogene 1 Neighboring gene microRNA 320d-1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Phenotypes

EBI GWAS Catalog

Description
A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.
EBI GWAS Catalog
Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
EBI GWAS Catalog
Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • twelve-thirteen translocation leukemia transcript (non-protein coding)

Clone Names

  • FLJ21437

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024505.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (TTL-T) differs in the 3' end compared to variant TTL-B2.
    Source sequence(s)
    AL391724, AY116214
    Related
    ENST00000616706.4
  2. NR_024506.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (TTL-B1) lacks an alternate exon compared to variant TTL-B2.
    Source sequence(s)
    AL445143, AY116214, AY116215
  3. NR_024507.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (TTL-B2) represents the longest transcript.
    Source sequence(s)
    AL445143, AY116214, AY116216

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    40347132..40481006 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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