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SYNDIG1L synapse differentiation inducing 1 like [ Homo sapiens (human) ]

Gene ID: 646658, updated on 13-Mar-2020

Summary

Official Symbol
SYNDIG1Lprovided by HGNC
Official Full Name
synapse differentiation inducing 1 likeprovided by HGNC
Primary source
HGNC:HGNC:32388
See related
Ensembl:ENSG00000183379 MIM:609999
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DSPC1; CAPUCIN; IFITMD4; TMEM90A
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See SYNDIG1L in Genome Data Viewer
Location:
14q24.3
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (74405893..74477080, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (74872596..74892805, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene SUB1 pseudogene 2 Neighboring gene vertebrae development associated Neighboring gene ribosomal protein S2 pseudogene 2 Neighboring gene microRNA 4709 Neighboring gene RAP1A, member of RAS oncogene family pseudogene Neighboring gene NPC intracellular cholesterol transporter 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
synapse differentiation-inducing gene protein 1-like
Names
caudate- and putamen-enriched sequence
dispanin subfamily C member 1
interferon induced transmembrane protein domain containing 4
transmembrane protein 90A

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105579.2NP_001099049.1  synapse differentiation-inducing gene protein 1-like

    See identical proteins and their annotated locations for NP_001099049.1

    Status: VALIDATED

    Source sequence(s)
    AC005479, CK906042, DB173128, DB473943
    Consensus CDS
    CCDS41970.1
    UniProtKB/Swiss-Prot
    A6NDD5
    Related
    ENSP00000331474.3, ENST00000331628.8
    Conserved Domains (1) summary
    pfam04505
    Location:157217
    CD225; Interferon-induced transmembrane protein

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    74405893..74477080 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017021600.1XP_016877089.1  synapse differentiation-inducing gene protein 1-like isoform X1

    UniProtKB/Swiss-Prot
    A6NDD5
    Conserved Domains (1) summary
    pfam04505
    Location:157217
    CD225; Interferon-induced transmembrane protein
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