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LINC03007 long intergenic non-protein coding RNA 3007 [ Homo sapiens (human) ]

Gene ID: 646588, updated on 14-Jan-2022

Summary

Official Symbol
LINC03007provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3007provided by HGNC
Primary source
HGNC:HGNC:56132
See related
Ensembl:ENSG00000223561
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in salivary gland (RPKM 4.3), endometrium (RPKM 0.4) and 4 other tissues See more
Orthologs
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Genomic context

See LINC03007 in Genome Data Viewer
Location:
7p15.2
Exon count:
11
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (25593301..25790119, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (25632921..25829739, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375195 Neighboring gene uncharacterized LOC105375194 Neighboring gene uncharacterized LOC105375196 Neighboring gene VISTA enhancer hs1677 Neighboring gene VISTA enhancer hs1600 Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 1 Neighboring gene VISTA enhancer hs1325 Neighboring gene uncharacterized LOC100506236 Neighboring gene VISTA enhancer hs1465

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Clone Names

  • AC003090.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_157808.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090, AC005165, DA691079
  2. NR_157809.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090, AC005165
  3. NR_157810.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090, AC005165
  4. NR_157811.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090, AC005165
  5. NR_157812.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090, AC005165
  6. NR_157813.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090, AC005165
  7. NR_157814.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090, AC005165
    Related
    ENST00000456777.6
  8. NR_157815.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090, AC005165
  9. NR_157816.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090, AC005165
  10. NR_157818.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000656871.1
  11. NR_157819.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000665149.1
  12. NR_157820.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000652885.1
  13. NR_157821.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000661813.1
  14. NR_157822.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000660499.1
  15. NR_157823.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000653559.1
  16. NR_157824.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
  17. NR_157825.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000658568.1
  18. NR_157826.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000654115.1
  19. NR_157827.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000423689.3
  20. NR_157828.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000656897.1
  21. NR_157829.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000446840.6
  22. NR_157830.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000668233.1
  23. NR_157831.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000669861.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    25593301..25790119 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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