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LINC00643 long intergenic non-protein coding RNA 643 [ Homo sapiens (human) ]

Gene ID: 646113, updated on 23-Nov-2021

Summary

Official Symbol
LINC00643provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 643provided by HGNC
Primary source
HGNC:HGNC:44296
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in brain (RPKM 11.4), placenta (RPKM 2.4) and 2 other tissues See more
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Genomic context

See LINC00643 in Genome Data Viewer
Location:
14q23.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (62117357..62134186)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (62584075..62600904)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 4I1 pseudogene 1 Neighboring gene synaptotagmin 16 Neighboring gene molybdenum cofactor synthesis 3 pseudogene 1 Neighboring gene tubulin alpha 1c pseudogene Neighboring gene long intergenic non-protein coding RNA 644 Neighboring gene uncharacterized LOC105370529 Neighboring gene uncharacterized LOC105370528

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Clone Names

  • FLJ18510, FLJ37214, FLJ39142, FLJ43390

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015358.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL390816

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    62117357..62134186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001039785.1: Suppressed sequence

    Description
    NM_001039785.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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