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RAET1K retinoic acid early transcript 1K (pseudogene) [ Homo sapiens (human) ]

Gene ID: 646024, updated on 10-Oct-2023

Summary

Official Symbol
RAET1Kprovided by HGNC
Official Full Name
retinoic acid early transcript 1K (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:16797
See related
Ensembl:ENSG00000290917 AllianceGenome:HGNC:16797
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
6q25.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (149998019..150005204, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (151197360..151204550, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (150319155..150326340, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:150285415-150285954 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:150286496-150287035 Neighboring gene UL16 binding protein 1 Neighboring gene basic transcription factor 3 pseudogene 10 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17673 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:150312121-150312704 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17674 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17675 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:150327472-150328187 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25270 Neighboring gene retinoic acid early transcript 1L Neighboring gene retinoic acid early transcript 1M (pseudogene)

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024045.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355497
    Related
    ENST00000533735.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    149998019..150005204 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    151197360..151204550 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)