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LHFPL3-AS1 LHFPL3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 645591, updated on 13-May-2022

Summary

Official Symbol
LHFPL3-AS1provided by HGNC
Official Full Name
LHFPL3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40341
See related
Ensembl:ENSG00000226869 AllianceGenome:HGNC:40341
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LHFPL3-AS1 in Genome Data Viewer
Location:
7q22.2
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (104796506..104804092, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (106110871..106118454, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (104436953..104444539, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene origin recognition complex subunit 5 Neighboring gene LHFPL tetraspan subfamily member 3 Neighboring gene eukaryotic translation initiation factor 4B pseudogene 6 Neighboring gene LHFPL3 antisense RNA 2 Neighboring gene uncharacterized LOC101927902 Neighboring gene Sharpr-MPRA regulatory region 8680 Neighboring gene RNA, 7SL, cytoplasmic 8, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

General gene information

Markers

Other Names

  • LHFPL3 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034141.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 3' splice pattern, compared to variant 1.
    Source sequence(s)
    BC012751, BU161581
    Related
    ENST00000417290.6
  2. NR_034142.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC091286, BU161581

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    104796506..104804092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    106110871..106118454 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)