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TMEM200C transmembrane protein 200C [ Homo sapiens (human) ]

Gene ID: 645369, updated on 23-Nov-2021

Summary

Official Symbol
TMEM200Cprovided by HGNC
Official Full Name
transmembrane protein 200Cprovided by HGNC
Primary source
HGNC:HGNC:37208
See related
Ensembl:ENSG00000206432
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TTMA
Expression
Broad expression in adrenal (RPKM 1.2), brain (RPKM 1.0) and 14 other tissues See more
Orthologs
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Genomic context

See TMEM200C in Genome Data Viewer
Location:
18p11.31
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 18 NC_000018.10 (5882072..5898701, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (5889411..5895953, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene erythrocyte membrane protein band 4.1 like 3 Neighboring gene atrophin-domain containing Neighboring gene MIR3976 host gene Neighboring gene uncharacterized LOC121725015 Neighboring gene microRNA 3976 Neighboring gene L3MBTL histone methyl-lysine binding protein 4 Neighboring gene Sharpr-MPRA regulatory region 6254 Neighboring gene RNA, U5F small nuclear 3, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
transmembrane protein 200C
Names
transmembrane protein TTMA
two transmembrane domain family member A
two transmembrane domain-containing family member A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080209.3NP_001073678.1  transmembrane protein 200C

    See identical proteins and their annotated locations for NP_001073678.1

    Status: VALIDATED

    Source sequence(s)
    AP005433
    Consensus CDS
    CCDS45825.1
    UniProtKB/Swiss-Prot
    A6NKL6
    Related
    ENSP00000463375.1, ENST00000581347.2
    Conserved Domains (1) summary
    pfam10177
    Location:14201
    DUF2371; Uncharacterized conserved protein (DUF2371)
  2. NM_001395400.1NP_001382329.1  transmembrane protein 200C

    Status: VALIDATED

    Source sequence(s)
    AP005433
    Conserved Domains (1) summary
    pfam10177
    Location:14201
    DUF2371; Uncharacterized conserved protein (DUF2371)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p13 Primary Assembly

    Range
    5882072..5898701 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011525729.3XP_011524031.1  transmembrane protein 200C isoform X1

    See identical proteins and their annotated locations for XP_011524031.1

    UniProtKB/Swiss-Prot
    A6NKL6
    Conserved Domains (1) summary
    pfam10177
    Location:14201
    DUF2371; Uncharacterized conserved protein (DUF2371)
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