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LINC01896 long intergenic non-protein coding RNA 1896 [ Homo sapiens (human) ]

Gene ID: 645321, updated on 21-Mar-2023

Summary

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Official Symbol
LINC01896provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1896provided by HGNC
Primary source
HGNC:HGNC:52715
See related
AllianceGenome:HGNC:52715
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in brain (RPKM 4.2), prostate (RPKM 1.3) and 2 other tissues See more
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Genomic context

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See LINC01896 in Genome Data Viewer
Location:
18q23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (78976814..78980113, complement)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (79211392..79214691, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene VISTA enhancer hs1056 Neighboring gene uncharacterized LOC105372224 Neighboring gene uncharacterized LOC105372225 Neighboring gene spalt like transcription factor 3 Neighboring gene ATPase phospholipid transporting 9B (putative) Neighboring gene uncharacterized LOC124904331

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    78976814..78980113 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_935681.3 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003315961.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    41929..45228 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_952162.3 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187666.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    41929..45228 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_952517.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    79211392..79214691 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088551.1 RNA Sequence

Nucleotide Protein
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