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LINC01896 long intergenic non-protein coding RNA 1896 [ Homo sapiens (human) ]

Gene ID: 645321, updated on 4-Mar-2025
Official Symbol
LINC01896provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1896provided by HGNC
Primary source
HGNC:HGNC:52715
See related
AllianceGenome:HGNC:52715
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in brain (RPKM 4.2), prostate (RPKM 1.3) and 2 other tissues See more
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See LINC01896 in Genome Data Viewer
Location:
18q23
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (78976555..78979691, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (79211133..79214269, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (76736555..76739691, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904330 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76447079-76447994 Neighboring gene VISTA enhancer hs1011 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76480426-76481346 Neighboring gene VISTA enhancer hs1056 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76528785-76529642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76539929-76540887 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76547900-76548400 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76548401-76548901 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76569491-76569992 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76569993-76570492 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76573303-76573813 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76589119-76589625 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:76610953-76612152 Neighboring gene uncharacterized LOC105372224 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:76669815-76671014 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:76686389-76687588 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76694205-76695173 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76695174-76696141 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76707071-76707585 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76732217-76732814 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:76732815-76733411 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:76736667-76737380 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:76741235-76742064 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:76743410-76744168 Neighboring gene NANOG hESC enhancer GRCh37_chr18:76744863-76745377 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:76753804-76754785 Neighboring gene uncharacterized LOC105372225 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:76766909-76768108 Neighboring gene spalt like transcription factor 3 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:76816919-76817092 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76819471-76819970

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Markers

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187285.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099689
  2. NR_187287.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099689
  3. NR_187288.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099689
  4. NR_187297.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099689

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    78976555..78979691 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003315961.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    41670..44806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187666.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    41670..44806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    79211133..79214269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)