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MNX1-AS1 MNX1 antisense RNA 1 (head to head) [ Homo sapiens (human) ]

Gene ID: 645249, updated on 17-Jun-2024

Summary

Official Symbol
MNX1-AS1provided by HGNC
Official Full Name
MNX1 antisense RNA 1 (head to head)provided by HGNC
Primary source
HGNC:HGNC:48954
See related
Ensembl:ENSG00000243479 AllianceGenome:HGNC:48954
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MAYA; CCAT5
Expression
Low expression observed in reference dataset See more
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Genomic context

See MNX1-AS1 in Genome Data Viewer
Location:
7q36.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (157010857..157016424)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (158198598..158204168)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (156803551..156809118)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18854 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18855 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:156761024-156761215 Neighboring gene nucleolar protein with MIF4G domain 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18856 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:156793008-156793178 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:156795552-156796258 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:156797975-156798627 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18857 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18858 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18859 Neighboring gene MNX1 antisense RNA 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26918 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26920 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26921 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26922 Neighboring gene motor neuron and pancreas homeobox 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:156833123-156833822 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:156838101-156838601 Neighboring gene MPRA-validated peak6868 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:156847242-156847742 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:156847743-156848243 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:156870553-156871110 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:156871111-156871667 Neighboring gene adenosylmethionine decarboxylase 1 pseudogene Neighboring gene uncharacterized LOC105375607

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038835.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI337260, BC022831, BU506764
    Related
    ENST00000480284.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    157010857..157016424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    158198598..158204168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)