U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC645188 uncharacterized LOC645188 [ Homo sapiens (human) ]

Gene ID: 645188, updated on 5-Mar-2024

Summary

Gene symbol
LOC645188
Gene description
uncharacterized LOC645188
See related
Ensembl:ENSG00000223438
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SPANX-L
Expression
Restricted expression toward testis (RPKM 1.3) See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LOC645188 in Genome Data Viewer
Location:
Xq27.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (141625866..141626744)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (139934583..139935461)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (140713996..140714874)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene SPANXA2 overlapping transcript 1 Neighboring gene sperm protein associated with the nucleus, X-linked, family member A1 Neighboring gene SPANX family member A2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chrX:140802566-140803765 Neighboring gene SPANX family member D Neighboring gene MAGE family member C3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171017.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC235097
    Related
    ENST00000412163.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    141625866..141626744
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    139934583..139935461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001318917.2: Suppressed sequence

    Description
    NM_001318917.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.