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LSP1P5 LSP1 pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 645166, updated on 15-Dec-2021

Summary

Official Symbol
LSP1P5provided by HGNC
Official Full Name
LSP1 pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:50697
See related
Ensembl:ENSG00000288905
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in placenta (RPKM 6.5), urinary bladder (RPKM 4.2) and 23 other tissues See more
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Genomic context

See LSP1P5 in Genome Data Viewer
Location:
1q21.1
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (144716079..144740806)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (148928313..148953054)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene lysine methyltransferase 2C pseudogene 1 Neighboring gene dopamine receptor D5 pseudogene 2 Neighboring gene RNA, 5S ribosomal pseudogene 59 Neighboring gene Sharpr-MPRA regulatory region 154 duplicate 3 Neighboring gene otopetrin-1-like Neighboring gene uncharacterized LOC105371216

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027354.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AK311729, FP700111
  2. NR_027355.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate 5' exon and an alternate 3' exon, compared to variant 1.
    Source sequence(s)
    AI087158, AK311729, BE814857, BG716766, DA808118
    Related
    ENST00000690033.1
  3. NR_027356.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has alternate 5' and 3' exons and lacks an internal alternate exon, compared to variant 1.
    Source sequence(s)
    AI087158, AK311729, AW954772, DA808118
    Related
    ENST00000686318.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    144716079..144740806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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