BLVRB biliverdin reductase B [Homo sapiens (human)] - Gene

Summary

Official Symbol: BLVRBprovided by HGNC
Official Full Name: biliverdin reductase Bprovided by HGNC
Primary source: HGNC:HGNC:1063
See related: Ensembl:ENSG00000090013 MIM:600941; AllianceGenome:HGNC:1063
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: FLR; BVRB; SDR43U1; HEL-S-10
Summary: The final step in heme metabolism in mammals is catalyzed by the cytosolic biliverdin reductase enzymes A and B (EC 1.3.1.24).[supplied by OMIM, Jul 2009]
Expression: Broad expression in bone marrow (RPKM 178.6), spleen (RPKM 63.9) and 23 other tissues See more
Orthologs: mouse all
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Genomic context

Location:: 19q13.2

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
110	current	GRCh38.p14 (GCF_000001405.40)	19	NC_000019.10 (40447768..40465745, complement)
110	current	T2T-CHM13v2.0 (GCF_009914755.1)	19	NC_060943.1 (43268426..43286397, complement)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	19	NC_000019.9 (40953675..40971652, complement)

Chromosome 19 - NC_000019.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Structure, dynamics and function of the evolutionarily changing biliverdin reductase B family.
Title: Structure, dynamics and function of the evolutionarily changing biliverdin reductase B family.
Early stages of lineage fate potential require glutamine anaplerotic functions and an intact Pentose phosphate pathway, which are, in part, regulated by BLVRB activity. In principle, BLVRB inhibition represents an alternative strategy for modulating cellular glutamine utilization with consequences for cancer and hematopoietic metabolism.
Title: Heme degradation enzyme biliverdin IXβ reductase is required for stem cell glutamine metabolism.
These results provide promising chemical scaffolds for the development of enhanced BLVRB inhibitors and identify chemical probes to better dissect the role of biliverdins, alternative substrates, and BLVRB function in physiologically relevant cellular contexts.
Title: <i>In silico</i> and crystallographic studies identify key structural features of biliverdin IXβ reductase inhibitors having nanomolar potency.
These data define the first physiologically relevant function of BLVRB and implicate its activity and/or heme-regulated BV tetrapyrrole(s) in a unique redox-regulated bioenergetic pathway.
Title: BLVRB redox mutation defines heme degradation in a metabolic pathway of enhanced thrombopoiesis in humans.
miR-127-5p suppressed NF-kappaB activity by directly targeting BLVRB in hepatocellular carcinoma cells.
Title: MicroRNA-127-5p targets the biliverdin reductase B/nuclear factor-κB pathway to suppress cell growth in hepatocellular carcinoma cells.
Data suggest that isoenzymes BVRA and BVRB play different roles in energy metabolism and in pathogenesis of abdominal obesity and hypertriglyceridemia. [REVIEW]
Title: Biliverdin reductase isozymes in metabolism.
quantum mechanics/molecular mechanics potential energy surfaces show that the lowest energy pathway proceeds with a positively charged pyrrole intermediate via two transition states
Title: Computational and experimental studies on the catalytic mechanism of biliverdin-IXbeta reductase.

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Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

A009D36 (e-PCR)
- UniSTS:3860

SHGC-33106 (e-PCR)
- UniSTS:40483

RH16416 (e-PCR)
- UniSTS:25928

RH46045 (e-PCR)
- UniSTS:28497

NoName (e-PCR)
- UniSTS:488045

Homology

Homologs of the BLVRB gene: The BLVRB gene is conserved in chimpanzee, Rhesus monkey, dog, cow, mouse, rat, zebrafish, fruit fly, mosquito, and frog.
Orthologs from Annotation Pipeline: 394 organisms have orthologs with human gene BLVRB
Orthologs

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables biliberdin reductase NAD+ activity	IEA Inferred from Electronic Annotation more info
enables biliverdin reductase (NAD(P)+) activity	IBA Inferred from Biological aspect of Ancestor more info	PubMed
enables biliverdin reductase (NAD(P)+) activity	IDA Inferred from Direct Assay more info	PubMed
enables biliverdin reductase (NADP+) activity	IEA Inferred from Electronic Annotation more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables riboflavin reductase (NADPH) activity	IBA Inferred from Biological aspect of Ancestor more info	PubMed
enables riboflavin reductase (NADPH) activity	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
involved_in heme catabolic process	IDA Inferred from Direct Assay more info	PubMed

Component	Evidence Code	Pubs
located_in cytosol	IDA Inferred from Direct Assay more info	PubMed
located_in cytosol	TAS Traceable Author Statement more info
located_in extracellular exosome	HDA more info	PubMed
located_in intracellular membrane-bounded organelle	IDA Inferred from Direct Assay more info
located_in nucleoplasm	IDA Inferred from Direct Assay more info
located_in plasma membrane	IDA Inferred from Direct Assay more info

General protein information

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Preferred Names: flavin reductase (NADPH)

Names: BVR-B; FR; GHBP; NADPH-dependent diaphorase; NADPH-flavin reductase; biliverdin-IX beta-reductase; epididymis secretory protein Li 10; green heme-binding protein; short chain dehydrogenase/reductase family 43U, member 1

NP_000704.1

EC 1.3.1.24

EC 1.5.1.30

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.