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SMIM23 small integral membrane protein 23 [ Homo sapiens (human) ]

Gene ID: 644994, updated on 23-Nov-2021

Summary

Official Symbol
SMIM23provided by HGNC
Official Full Name
small integral membrane protein 23provided by HGNC
Primary source
HGNC:HGNC:34440
See related
Ensembl:ENSG00000185662
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C5orf50
Expression
Restricted expression toward testis (RPKM 3.7) See more
Orthologs
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Genomic context

See SMIM23 in Genome Data Viewer
Location:
5q35.1
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (171772637..171791136)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (171212821..171218140)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377724 Neighboring gene uncharacterized LOC105377723 Neighboring gene uncharacterized LOC105377725 Neighboring gene uncharacterized LOC107986476

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
small integral membrane protein 23
Names
CTB-78H18.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001289970.2NP_001276899.1  small integral membrane protein 23

    Status: VALIDATED

    Source sequence(s)
    AC011410, EG327678
    Consensus CDS
    CCDS87347.1
    UniProtKB/Swiss-Prot
    A6NLE4
    UniProtKB/TrEMBL
    H0YC34
    Related
    ENSP00000430818.4, ENST00000523047.4
    Conserved Domains (1) summary
    pfam15466
    Location:1139
    DUF4635; Domain of unknown function (DUF4635)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    171772637..171791136
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011534624.2XP_011532926.1  small integral membrane protein 23 isoform X2

    See identical proteins and their annotated locations for XP_011532926.1

    Conserved Domains (1) summary
    pfam15466
    Location:14105
    DUF4635; Domain of unknown function (DUF4635)
  2. XM_011534623.2XP_011532925.1  small integral membrane protein 23 isoform X2

    See identical proteins and their annotated locations for XP_011532925.1

    Conserved Domains (1) summary
    pfam15466
    Location:14105
    DUF4635; Domain of unknown function (DUF4635)
  3. XM_011534622.1XP_011532924.1  small integral membrane protein 23 isoform X1

    Conserved Domains (1) summary
    pfam15466
    Location:1144
    DUF4635; Domain of unknown function (DUF4635)
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