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MT1IP metallothionein 1I, pseudogene [ Homo sapiens (human) ]

Gene ID: 644314, updated on 5-Mar-2024

Summary

Official Symbol
MT1IPprovided by HGNC
Official Full Name
metallothionein 1I, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:7401
See related
MIM:156355; AllianceGenome:HGNC:7401
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MT1; MTE; MT1I
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See MT1IP in Genome Data Viewer
Location:
16q13
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (56676116..56677877)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (62471093..62472855)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (56710028..56711789)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene metallothionein 1G Neighboring gene metallothionein 1H Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:56708581-56709252 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:56716235-56716766 Neighboring gene metallothionein 1X Neighboring gene developmental pluripotency associated 2 pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003669.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AF348997, BC144614
  2. NR_104045.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the middle region and is shorter than variant 1.
    Source sequence(s)
    AF348997, BC144606
  3. NR_104046.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AF348997, BC171791

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    56676116..56677877
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    62471093..62472855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_175621.2: Suppressed sequence

    Description
    NM_175621.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.