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TTC31 tetratricopeptide repeat domain 31 [ Homo sapiens (human) ]

Gene ID: 64427, updated on 4-Jul-2021

Summary

Official Symbol
TTC31provided by HGNC
Official Full Name
tetratricopeptide repeat domain 31provided by HGNC
Primary source
HGNC:HGNC:25759
See related
Ensembl:ENSG00000115282
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in duodenum (RPKM 9.8), lymph node (RPKM 9.1) and 25 other tissues See more
Orthologs
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Genomic context

See TTC31 in Genome Data Viewer
Location:
2p13.1
Exon count:
14
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (74483078..74494559)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (74710208..74721686)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L53 Neighboring gene coiled-coil domain containing 142 Neighboring gene ladybird homeobox 2 Neighboring gene Sharpr-MPRA regulatory region 184 Neighboring gene LBX2 antisense RNA 1 Neighboring gene polycomb group ring finger 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ12788, FLJ33201, MGC120200

General protein information

Preferred Names
tetratricopeptide repeat protein 31
Names
TPR repeat protein 31

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001376129.1NP_001363058.1  tetratricopeptide repeat protein 31 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) encodes the longest isoform (b).
    Source sequence(s)
    AC005041
    Conserved Domains (2) summary
    PLN03088
    Location:342415
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:323351
    TPR; TPR repeat [structural motif]
  2. NM_001376130.1NP_001363059.1  tetratricopeptide repeat protein 31 isoform c

    Status: VALIDATED

    Source sequence(s)
    AC005041
    Conserved Domains (2) summary
    PLN03088
    Location:324397
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:305333
    TPR; TPR repeat [structural motif]
  3. NM_001376132.1NP_001363061.1  tetratricopeptide repeat protein 31 isoform d

    Status: VALIDATED

    Source sequence(s)
    AC005041
    Conserved Domains (2) summary
    PLN03088
    Location:322395
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:303331
    TPR; TPR repeat [structural motif]
  4. NM_001376133.1NP_001363062.1  tetratricopeptide repeat protein 31 isoform e

    Status: VALIDATED

    Source sequence(s)
    AC005041
    Conserved Domains (2) summary
    PLN03088
    Location:322395
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:303331
    TPR; TPR repeat [structural motif]
  5. NM_001376134.1NP_001363063.1  tetratricopeptide repeat protein 31 isoform f

    Status: VALIDATED

    Source sequence(s)
    AC005041
    Conserved Domains (2) summary
    PLN03088
    Location:253326
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:234262
    TPR; TPR repeat [structural motif]
  6. NM_001376135.1NP_001363064.1  tetratricopeptide repeat protein 31 isoform g

    Status: VALIDATED

    Source sequence(s)
    AC005041
    Conserved Domains (2) summary
    PLN03088
    Location:251324
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:232260
    TPR; TPR repeat [structural motif]
  7. NM_001376136.1NP_001363065.1  tetratricopeptide repeat protein 31 isoform h

    Status: VALIDATED

    Source sequence(s)
    AC005041
    Conserved Domains (2) summary
    PLN03088
    Location:324397
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:305333
    TPR; TPR repeat [structural motif]
  8. NM_001376137.1NP_001363066.1  tetratricopeptide repeat protein 31 isoform i

    Status: VALIDATED

    Source sequence(s)
    AC005041
    Conserved Domains (2) summary
    PLN03088
    Location:324397
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:305333
    TPR; TPR repeat [structural motif]
  9. NM_001376138.1NP_001363067.1  tetratricopeptide repeat protein 31 isoform j

    Status: VALIDATED

    Source sequence(s)
    AC005041
    Conserved Domains (2) summary
    PLN03088
    Location:200273
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:181209
    TPR; TPR repeat [structural motif]
  10. NM_001376139.1NP_001363068.1  tetratricopeptide repeat protein 31 isoform k

    Status: VALIDATED

    Source sequence(s)
    AC005041
    Conserved Domains (2) summary
    PLN03088
    Location:180253
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:161189
    TPR; TPR repeat [structural motif]
  11. NM_001376140.1NP_001363069.1  tetratricopeptide repeat protein 31 isoform l

    Status: VALIDATED

    Source sequence(s)
    AC005041
    Conserved Domains (2) summary
    PLN03088
    Location:178251
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:159187
    TPR; TPR repeat [structural motif]
  12. NM_001376141.1NP_001363070.1  tetratricopeptide repeat protein 31 isoform m

    Status: VALIDATED

    Source sequence(s)
    AC005041
    Conserved Domains (2) summary
    PLN03088
    Location:182255
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:163191
    TPR; TPR repeat [structural motif]
  13. NM_001376144.1NP_001363073.1  tetratricopeptide repeat protein 31 isoform n

    Status: VALIDATED

    Source sequence(s)
    AC005041
    Conserved Domains (2) summary
    PLN03088
    Location:152225
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:133161
    TPR; TPR repeat [structural motif]
  14. NM_001376145.1NP_001363074.1  tetratricopeptide repeat protein 31 isoform o

    Status: VALIDATED

    Source sequence(s)
    AC005041
    Conserved Domains (2) summary
    PLN03088
    Location:180244
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:161189
    TPR; TPR repeat [structural motif]
  15. NM_022492.6NP_071937.4  tetratricopeptide repeat protein 31 isoform a

    See identical proteins and their annotated locations for NP_071937.4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform a.
    Source sequence(s)
    AC005041
    Consensus CDS
    CCDS42701.1
    UniProtKB/Swiss-Prot
    Q49AM3
    Related
    ENSP00000233623.6, ENST00000233623.11
    Conserved Domains (2) summary
    PLN03088
    Location:324397
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:305333
    TPR; TPR repeat [structural motif]

RNA

  1. NR_027749.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AC005041
    Related
    ENST00000424122.5
  2. NR_164770.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005041
  3. NR_164771.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005041
  4. NR_164772.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005041
  5. NR_164773.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005041
    Related
    ENST00000410003.5
  6. NR_164774.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005041

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    74483078..74494559
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011533035.1XP_011531337.1  tetratricopeptide repeat protein 31 isoform X1

    Conserved Domains (2) summary
    sd00006
    Location:325353
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:324390
    TPR_11; TPR repeat

RNA

  1. XR_001738899.2 RNA Sequence

  2. XR_001738896.1 RNA Sequence

  3. XR_244952.2 RNA Sequence

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