U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

NR2F2-AS1 NR2F2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 644192, updated on 3-Dec-2022

Summary

Official Symbol
NR2F2-AS1provided by HGNC
Official Full Name
NR2F2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:44222
See related
Ensembl:ENSG00000247809 AllianceGenome:HGNC:44222
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in ovary (RPKM 4.1), endometrium (RPKM 2.2) and 16 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See NR2F2-AS1 in Genome Data Viewer
Location:
15q26.2
Exon count:
12
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (96127360..96327361, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (93891941..94091945, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (96670589..96870590, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene CRISPRi-validated cis-regulatory element chr15.3490 Neighboring gene uncharacterized LOC112268156 Neighboring gene uncharacterized LOC105370998 Neighboring gene uncharacterized LOC105369212 Neighboring gene uncharacterized LOC124903583 Neighboring gene uncharacterized LOC105370997 Neighboring gene uncharacterized LOC124903584 Neighboring gene uncharacterized LOC101927263 Neighboring gene microRNA 1469 Neighboring gene nuclear receptor subfamily 2 group F member 2 Neighboring gene tubulin alpha pseudogene 12

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Family-based genome-wide association study of frontal θ oscillations identifies potassium channel gene KCNJ6.
EBI GWAS Catalog
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.
EBI GWAS Catalog
Genome-wide meta-analysis identifies new susceptibility loci for migraine.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • NR2F2 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_102743.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC012409, AK307134, CF528780, DA627574
  2. NR_102744.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks multiple 3' exons and its transcription extends past a splice site used in variant 1, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AW451632, CB217374, DA627574
    Related
    ENST00000560010.1
  3. NR_125738.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' terminal exon, lacks multiple 3' exons, and contains three alternate 3' exons, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AC012409, BI758289, DA941342
    Related
    ENST00000560800.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    96127360..96327361 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    93891941..94091945 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)