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MSH2-OT1 MSH2 overlapping transcript 1 [ Homo sapiens (human) ]

Gene ID: 644093, updated on 19-Jan-2022

Summary

Official Symbol
MSH2-OT1provided by HGNC
Official Full Name
MSH2 overlapping transcript 1provided by HGNC
Primary source
HGNC:HGNC:40319
See related
Ensembl:ENSG00000235760
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HCG2040054
Expression
Biased expression in testis (RPKM 1.5) and kidney (RPKM 0.1) See more
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Genomic context

See MSH2-OT1 in Genome Data Viewer
Location:
2p16.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (47527537..47529164)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (47754676..47756303)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene RN7SK pseudogene 119 Neighboring gene epithelial cell adhesion molecule Neighboring gene microRNA 559 Neighboring gene mutS homolog 2 Neighboring gene potassium two pore domain channel subfamily K member 12 Neighboring gene Sharpr-MPRA regulatory region 1309 Neighboring gene ribosomal protein L18a pseudogene 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120602.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138655
    Related
    ENST00000435331.3

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    47527537..47529164
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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