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USP46-DT USP46 divergent transcript [ Homo sapiens (human) ]

Gene ID: 643783, updated on 23-Nov-2021

Summary

Official Symbol
USP46-DTprovided by HGNC
Official Full Name
USP46 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:43991
See related
Ensembl:ENSG00000248866
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
USP46-AS1
Expression
Ubiquitous expression in heart (RPKM 4.4), kidney (RPKM 4.3) and 24 other tissues See more
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Genomic context

See USP46-DT in Genome Data Viewer
Location:
4q12
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (52659406..52661498)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (53525573..53527665)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268466 Neighboring gene RNA, U6 small nuclear 1252, pseudogene Neighboring gene ubiquitin specific peptidase 46 Neighboring gene microRNA 4449 Neighboring gene small nucleolar RNA, H/ACA box 26 Neighboring gene differentiation antagonizing non-protein coding RNA

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • CTD-2314I6.1
  • USP46 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125363.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA405370, AI311122, BX354350, CN313378
    Related
    ENST00000503051.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    52659406..52661498
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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