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TRAF3IP2-AS1 TRAF3IP2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 643749, updated on 20-Nov-2022

Summary

Official Symbol
TRAF3IP2-AS1provided by HGNC
Official Full Name
TRAF3IP2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40005
See related
Ensembl:ENSG00000231889 AllianceGenome:HGNC:40005
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C6UAS; C6orf3; BetaFAAR; NCRNA00248; TRAF3IP2-AS2
Expression
Ubiquitous expression in brain (RPKM 2.1), endometrium (RPKM 1.3) and 23 other tissues See more
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Genomic context

See TRAF3IP2-AS1 in Genome Data Viewer
Location:
6q21
Exon count:
7
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (111483472..111602295)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (112666471..112785304)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (111804675..111923498)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene REV3 like, DNA directed polymerase zeta catalytic subunit Neighboring gene FCF1 pseudogene 5 Neighboring gene bromodomain containing 7 pseudogene 4 Neighboring gene uncharacterized LOC107986520 Neighboring gene uncharacterized LOC107986522 Neighboring gene VISTA enhancer hs1690 Neighboring gene TRAF3 interacting protein 2 Neighboring gene TRAF3IP2 eExon liver enhancer Neighboring gene uncharacterized LOC105377944 Neighboring gene Sharpr-MPRA regulatory region 7524 Neighboring gene small nucleolar RNA U13

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Common variants at TRAF3IP2 are associated with susceptibility to psoriatic arthritis and psoriasis.
EBI GWAS Catalog
Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2.
EBI GWAS Catalog
Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • Beta-cell function and apoptosis regulator
  • TRAF3IP2 antisense RNA 1 (non-protein coding)
  • TRAF3IP2 antisense RNA 2 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034108.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL008730, AL136310, Z97989
  2. NR_034109.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two alternate internal exons, compared to variant 1.
    Source sequence(s)
    AL136310, Z97989
  3. NR_034110.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate 3' splice pattern, compared to variant 1.
    Source sequence(s)
    AL008730, AL136310
    Related
    ENST00000449449.7
  4. NR_034111.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses the same first exon as variant 1, but uses an alternate set of exons for the 3' end.
    Source sequence(s)
    AL136310, BX647114
    Related
    ENST00000525151.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    111483472..111602295
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    112666471..112785304
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)