Format

Send to:

Choose Destination

CASP4LP caspase 4 like, pseudogene [ Homo sapiens (human) ]

Gene ID: 643733, updated on 23-Nov-2021

Summary

Official Symbol
CASP4LPprovided by HGNC
Official Full Name
caspase 4 like, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:53657
See related
Ensembl:ENSG00000235505
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CASP17P
Expression
Broad expression in lung (RPKM 7.8), lymph node (RPKM 7.5) and 21 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See CASP4LP in Genome Data Viewer
Location:
11q22.3
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (104901549..104918175, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (104772276..104788902, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369466 Neighboring gene uncharacterized LOC107984380 Neighboring gene caspase 12 (gene/pseudogene) Neighboring gene caspase 4 Neighboring gene Sharpr-MPRA regulatory region 11455 Neighboring gene caspase 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • caspase 17, pseudogene
  • caspase 4, apoptosis-related cysteine peptidase pseudogene

Clone Names

  • DKFZp667O0320

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034078.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AP002004
    Related
    ENST00000527637.5
  2. NR_034079.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice acceptor site near the 3' end, compared to variant 1.
    Source sequence(s)
    AP002004
    Related
    ENST00000528437.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    104901549..104918175 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center