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CCDC168 coiled-coil domain containing 168 [ Homo sapiens (human) ]

Gene ID: 643677, updated on 22-Sep-2022

Summary

Official Symbol
CCDC168provided by HGNC
Official Full Name
coiled-coil domain containing 168provided by HGNC
Primary source
HGNC:HGNC:26851
See related
Ensembl:ENSG00000175820 AllianceGenome:HGNC:26851
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C13orf40
Expression
Restricted expression toward testis (RPKM 2.6) See more
Orthologs
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Genomic context

See CCDC168 in Genome Data Viewer
Location:
13q33.1
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (102729367..102759072, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (101947434..101977110, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (103381717..103411422, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene methyltransferase 21C, AARS1 lysine Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC105370337 Neighboring gene testis expressed 30 Neighboring gene protein O-glucosyltransferase 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ40176, FLJ43996, DKFZp434L2319, DKFZp686P1429

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
leucine-rich repeat transmembrane protein CCDC168
Names
coiled-coil domain-containing protein 168

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053191.1 RefSeqGene

    Range
    5001..34706
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001146197.3NP_001139669.1  leucine-rich repeat transmembrane protein CCDC168

    Status: VALIDATED

    Source sequence(s)
    AL157769, AL833908
    Consensus CDS
    CCDS73596.1
    UniProtKB/Swiss-Prot
    Q8N800
    Related
    ENSP00000320232.3, ENST00000322527.4
    Conserved Domains (1) summary
    pfam15804
    Location:46314835
    CCDC168_N; Coiled-coil domain-containing protein 168

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    102729367..102759072 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011521106.2XP_011519408.1  leucine-rich repeat transmembrane protein CCDC168 isoform X1

    Conserved Domains (1) summary
    pfam15804
    Location:45914795
    CCDC168_N; Coiled-coil domain-containing protein 168

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    101947434..101977110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)