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CCER2 coiled-coil glutamate rich protein 2 [ Homo sapiens (human) ]

Gene ID: 643669, updated on 5-Jan-2022

Summary

Official Symbol
CCER2provided by HGNC
Official Full Name
coiled-coil glutamate rich protein 2provided by HGNC
Primary source
HGNC:HGNC:44662
See related
Ensembl:ENSG00000262484 MIM:617634
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See CCER2 in Genome Data Viewer
Location:
19q13.2
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (38908171..38914371, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (39399620..39402826, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene Ras and Rab interactor like Neighboring gene sirtuin 2 Neighboring gene NFKB inhibitor beta Neighboring gene seryl-tRNA synthetase 2, mitochondrial Neighboring gene mitochondrial ribosomal protein S12

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
coiled-coil domain-containing glutamate-rich protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243212.2NP_001230141.1  coiled-coil domain-containing glutamate-rich protein 2 precursor

    See identical proteins and their annotated locations for NP_001230141.1

    Status: VALIDATED

    Source sequence(s)
    AC011455
    Consensus CDS
    CCDS58661.1
    UniProtKB/Swiss-Prot
    I3L3R5
    Related
    ENSP00000460665.1, ENST00000571838.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    38908171..38914371 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011527219.3XP_011525521.1  coiled-coil domain-containing glutamate-rich protein 2 isoform X3

  2. XM_011527218.3XP_011525520.1  coiled-coil domain-containing glutamate-rich protein 2 isoform X2

    See identical proteins and their annotated locations for XP_011525520.1

    UniProtKB/Swiss-Prot
    I3L3R5
  3. XM_011527217.2XP_011525519.1  coiled-coil domain-containing glutamate-rich protein 2 isoform X1

    See identical proteins and their annotated locations for XP_011525519.1

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_014040929.1 Reference GRCh38.p13 PATCHES

    Range
    318652..321858 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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