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LINC00842 long intergenic non-protein coding RNA 842 [ Homo sapiens (human) ]

Gene ID: 643650, updated on 1-Jun-2020

Summary

Official Symbol
LINC00842provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 842provided by HGNC
Primary source
HGNC:HGNC:44989
See related
Ensembl:ENSG00000285294
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in skin (RPKM 3.0), lung (RPKM 0.7) and 9 other tissues See more

Genomic context

See LINC00842 in Genome Data Viewer
Location:
10q11.22
Exon count:
4
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (46398362..46453306)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (47096454..47151400, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene protein FAM25 Neighboring gene annexin A8 like 1 Neighboring gene uncharacterized LOC107987152 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 33 Neighboring gene neuropeptide Y receptor Y4 Neighboring gene G protein regulated inducer of neurite outgrowth 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033957.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC244230
    Related
    ENST00000614356.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    46398362..46453306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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