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BTBD18 BTB domain containing 18 [ Homo sapiens (human) ]

Gene ID: 643376, updated on 2-Oct-2018

Summary

Official Symbol
BTBD18provided by HGNC
Official Full Name
BTB domain containing 18provided by HGNC
Primary source
HGNC:HGNC:37214
See related
Ensembl:ENSG00000233436 Vega:OTTHUMG00000167203
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.6), adrenal (RPKM 1.4) and 18 other tissues See more
Orthologs

Genomic context

See BTBD18 in Genome Data Viewer
Location:
11q12.1
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 11 NC_000011.10 (57743514..57753176, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (57510986..57519253, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene TMX2-CTNND1 readthrough (NMD candidate) Neighboring gene mediator complex subunit 19 Neighboring gene peptidylprolyl isomerase A pseudogene 42 Neighboring gene thioredoxin related transmembrane protein 2 Neighboring gene selenoprotein H Neighboring gene catenin delta 1 Neighboring gene olfactory receptor family 5 subfamily BA member 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
cell differentiation IEA
Inferred from Electronic Annotation
more info
 
male meiosis I ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of transposition ISS
Inferred from Sequence or Structural Similarity
more info
 
piRNA biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of transcription elongation from RNA polymerase II promoter ISS
Inferred from Sequence or Structural Similarity
more info
 
spermatogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
BTB/POZ domain-containing protein 18
Names
BTB (POZ) domain containing 18
hCG1730474

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145101.1NP_001138573.1  BTB/POZ domain-containing protein 18

    See identical proteins and their annotated locations for NP_001138573.1

    Status: VALIDATED

    Source sequence(s)
    AI699344, AP001931, BC157854, DC346943
    Consensus CDS
    CCDS44603.1
    UniProtKB/Swiss-Prot
    B2RXH4
    Related
    ENSP00000394472.1, ENST00000422652.5
    Conserved Domains (1) summary
    pfam00651
    Location:24120
    BTB; BTB/POZ domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p12 Primary Assembly

    Range
    57743514..57753176 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011545212.2XP_011543514.1  BTB/POZ domain-containing protein 18 isoform X1

    See identical proteins and their annotated locations for XP_011543514.1

    UniProtKB/Swiss-Prot
    B2RXH4
    Conserved Domains (1) summary
    pfam00651
    Location:24120
    BTB; BTB/POZ domain
  2. XM_017018128.1XP_016873617.1  BTB/POZ domain-containing protein 18 isoform X1

    UniProtKB/Swiss-Prot
    B2RXH4
    Related
    ENSP00000397020.2, ENST00000436147.3
    Conserved Domains (1) summary
    pfam00651
    Location:24120
    BTB; BTB/POZ domain
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