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SMIM15 small integral membrane protein 15 [ Homo sapiens (human) ]

Gene ID: 643155, updated on 12-Oct-2019

Summary

Official Symbol
SMIM15provided by HGNC
Official Full Name
small integral membrane protein 15provided by HGNC
Primary source
HGNC:HGNC:33861
See related
Ensembl:ENSG00000188725
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C5orf43
Expression
Ubiquitous expression in colon (RPKM 23.0), thyroid (RPKM 19.2) and 25 other tissues See more
Orthologs

Genomic context

See SMIM15 in Genome Data Viewer
Location:
5q12.1
Exon count:
3
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (61157704..61162468, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (60453536..60458302, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ERCC excision repair 8, CSA ubiquitin ligase complex subunit Neighboring gene ERCC8 antisense RNA 1 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 2 Neighboring gene SMIM15 antisense RNA 1 Neighboring gene long intergenic non-protein coding RNA 2057 Neighboring gene uncharacterized LOC105378993

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Clone Names

  • DKFZp686E2158, DKFZp686O1385

Gene Ontology Provided by GOA

Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
small integral membrane protein 15
Names
UPF0542 protein C5orf43

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001048249.4NP_001041714.1  small integral membrane protein 15

    See identical proteins and their annotated locations for NP_001041714.1

    Status: VALIDATED

    Source sequence(s)
    AC008498, BX538015, DA039277
    Consensus CDS
    CCDS34165.1
    UniProtKB/Swiss-Prot
    Q7Z3B0
    Related
    ENSP00000339324.3, ENST00000339020.8
    Conserved Domains (1) summary
    pfam15086
    Location:471
    UPF0542; Uncharacterized protein family UPF0542

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    61157704..61162468 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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