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C11orf97 chromosome 11 open reading frame 97 [ Homo sapiens (human) ]

Gene ID: 643037, updated on 23-Nov-2021

Summary

Official Symbol
C11orf97provided by HGNC
Official Full Name
chromosome 11 open reading frame 97provided by HGNC
Primary source
HGNC:HGNC:49544
See related
Ensembl:ENSG00000257057
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01171
Expression
Biased expression in testis (RPKM 4.5), lung (RPKM 1.0) and 4 other tissues See more
Orthologs
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Genomic context

See C11orf97 in Genome Data Viewer
Location:
11q21
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (94512461..94532123)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (94245627..94265289)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene MRE11 homolog, double strand break repair nuclease Neighboring gene microRNA 548l Neighboring gene ankyrin repeat domain 49 Neighboring gene PIWIL4 antisense RNA 1 Neighboring gene fucosyltransferase 4 Neighboring gene piwi like RNA-mediated gene silencing 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in ciliary basal body ISS
Inferred from Sequence or Structural Similarity
more info
 
is_active_in ciliary base IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein C11orf97
Names
long intergenic non-protein coding RNA 1171

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190462.2NP_001177391.1  uncharacterized protein C11orf97

    Status: VALIDATED

    Source sequence(s)
    AP000943
    Consensus CDS
    CCDS81618.1
    UniProtKB/Swiss-Prot
    A0A1B0GVM6
    Related
    ENSP00000490577.1, ENST00000542198.3

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    94512461..94532123
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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