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LINC00205 long intergenic non-protein coding RNA 205 [ Homo sapiens (human) ]

Gene ID: 642852, updated on 1-Oct-2022

Summary

Official Symbol
LINC00205provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 205provided by HGNC
Primary source
HGNC:HGNC:16420
See related
Ensembl:ENSG00000223768 AllianceGenome:HGNC:16420
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LVBU; NCRNA00205
Expression
Ubiquitous expression in ovary (RPKM 4.7), brain (RPKM 4.4) and 24 other tissues See more
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Genomic context

See LINC00205 in Genome Data Viewer
Location:
21q22.3
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (45288052..45297354)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (43652007..43661309)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (46707967..46717269)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 334 Neighboring gene U2 spliceosomal RNA Neighboring gene protein O-fucosyltransferase 2 Neighboring gene uncharacterized LOC124905040 Neighboring gene long intergenic non-protein coding RNA 316

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • lncRNA regulation via BCL6/urea cycle

Clone Names

  • FLJ31604, FLJ34903, DKFZp547J125

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026943.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC022830, BC063873, BX322557
    Related
    ENST00000400362.4

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    45288052..45297354
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    43652007..43661309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)