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LOC642846 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like [ Homo sapiens (human) ]

Gene ID: 642846, updated on 4-Mar-2025

Summary

Gene symbol
LOC642846
Gene description
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in bone marrow (RPKM 10.8), skin (RPKM 6.4) and 25 other tissues See more
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Genomic context

See LOC642846 in Genome Data Viewer
Location:
12p13.31
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (9283657..9314088)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (9266161..9296648)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (9436253..9466684)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:9393003-9394202 Neighboring gene pregnancy zone protein-like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4223 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4224 Neighboring gene microRNA 1244-3 Neighboring gene long intergenic non-protein coding RNA 987 Neighboring gene prothymosin alpha pseudogene 4 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:9435851-9436699 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:9442077-9442928 Neighboring gene uncharacterized LOC105369649 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5940 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5941 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4225 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:9517085-9517601 Neighboring gene uncharacterized LOC101928030 Neighboring gene long intergenic non-protein coding RNA 2367 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:9531319-9531821

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Phenotypes

EBI GWAS Catalog

Description
Genetic variants associated with breast size also influence breast cancer risk.
EBI GWAS Catalog
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024374.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009533, AK296420, AK310166, AW391236, BC078152

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    9283657..9314088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    9266161..9296648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)