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epha4b eph receptor A4b [ Danio rerio (zebrafish) ]

Gene ID: 64270, updated on 8-Aug-2021

Summary

Official Symbol
epha4bprovided by ZNC
Official Full Name
eph receptor A4bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030826-6
See related
Ensembl:ENSDARG00000011600
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
Eph; rtk; rtk2; EphA3; epha4; id:ibd27; id:ibd2782
Orthologs
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Genomic context

See epha4b in Genome Data Viewer
Location:
chromosome: 2
Exon count:
17
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (40294313..40514151)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (40424222..40660467)
103 previous assembly Zv9 (GCF_000002035.4) 2 NC_007113.5 (40081899..40266727)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene antifreeze protein Maxi-like Neighboring gene chemokine (C motif) ligand 32a, duplicate 1 Neighboring gene UDP-glucose glycoprotein glucosyltransferase 1 Neighboring gene heparan sulfate 6-O-sulfotransferase 1a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables ephrin receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables kinase activity IEA
Inferred from Electronic Annotation
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 
enables protein tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
 
enables transmembrane receptor protein tyrosine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables transmembrane receptor protein tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
 
enables transmembrane-ephrin receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in neuron projection IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
part_of receptor complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
ephrin type-A receptor 4b
Names
eph-like receptor tyrosine kinase 2
NP_705944.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_153658.1NP_705944.1  ephrin type-A receptor 4b precursor

    See identical proteins and their annotated locations for NP_705944.1

    Status: PROVISIONAL

    Source sequence(s)
    AF369381
    UniProtKB/TrEMBL
    Q90ZN9
    Related
    ENSDARP00000030606.8, ENSDART00000037292.9
    Conserved Domains (7) summary
    cd09488
    Location:907967
    SAM_EPH-R; SAM domain of EPH family of tyrosine kinase receptors
    smart00454
    Location:907967
    SAM; Sterile alpha motif
    cd10473
    Location:31203
    EphR_LBD_A; Ligand Binding Domain of Ephrin type-A Receptors
    cd00063
    Location:447526
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd05066
    Location:617883
    PTKc_EphR_A; Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors
    pfam07714
    Location:622879
    Pkinase_Tyr; Protein tyrosine kinase
    pfam14575
    Location:546617
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    40294313..40514151
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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