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HNRNPA1L3 heterogeneous nuclear ribonucleoprotein A1 like 3 [ Homo sapiens (human) ]

Gene ID: 642659, updated on 2-Nov-2024

Summary

Official Symbol
HNRNPA1L3provided by HGNC
Official Full Name
heterogeneous nuclear ribonucleoprotein A1 like 3provided by HGNC
Primary source
HGNC:HGNC:48778
See related
Ensembl:ENSG00000224578 AllianceGenome:HGNC:48778
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HNRNPA1P48
Summary
Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in organelle. Predicted to be part of catalytic step 2 spliceosome. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See HNRNPA1L3 in Genome Data Viewer
Location:
16q12.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (51645757..51647079)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (57443605..57444927)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (51679668..51680990)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723323 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:51426797-51427996 Neighboring gene VISTA enhancer hs848 Neighboring gene VISTA enhancer hs74 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:51573189-51573803 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:51573804-51574417 Neighboring gene VISTA enhancer hs73 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:51611051-51612250 Neighboring gene uncharacterized LOC107984892 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:51654939-51656138 Neighboring gene VISTA enhancer hs72 Neighboring gene VISTA enhancer hs71 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:51685231-51685835 Neighboring gene RN7SK pseudogene 142 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:51738563-51738778 Neighboring gene uncharacterized LOC105371257 Neighboring gene long intergenic non-protein coding RNA 1571

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
heterogeneous nuclear ribonucleoprotein A1-like 3
Names
heterogeneous nuclear ribonucleoprotein A1 pseudogene 48

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001396241.1NP_001383170.1  heterogeneous nuclear ribonucleoprotein A1-like 3

    Status: VALIDATED

    Source sequence(s)
    AC084058
    Consensus CDS
    CCDS92159.1
    UniProtKB/Swiss-Prot
    A0A2R8Y4L2
    UniProtKB/TrEMBL
    Q6IPF2
    Related
    ENSP00000513590.2, ENST00000698152.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    51645757..51647079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    57443605..57444927
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_005530.4: Suppressed sequence

    Description
    NG_005530.4: This RefSeq was removed because it is now thought that this gene is a coding retrogene.