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ISL1-DT ISL1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 642366, updated on 10-Oct-2023

Summary

Official Symbol
ISL1-DTprovided by HGNC
Official Full Name
ISL1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55414
See related
AllianceGenome:HGNC:55414
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in prostate (RPKM 2.4), stomach (RPKM 1.0) and 7 other tissues See more
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Genomic context

See ISL1-DT in Genome Data Viewer
Location:
5q11.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (51372736..51383332, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (52191916..52202512, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (50668570..50679166, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:50574325-50574916 Neighboring gene ribosomal protein S10 pseudogene 12 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:50600765-50601265 Neighboring gene small nucleolar RNA U13 Neighboring gene ISL1 intron 2 enhancer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:50688625-50689156 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:50690220-50690935 Neighboring gene ISL LIM homeobox 1 Neighboring gene high mobility group box 1 pseudogene 47

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046243.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010478, DB039350

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    51372736..51383332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    52191916..52202512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)