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OSGEPL1 O-sialoglycoprotein endopeptidase like 1 [ Homo sapiens (human) ]

Gene ID: 64172, updated on 19-Sep-2024

Summary

Official Symbol
OSGEPL1provided by HGNC
Official Full Name
O-sialoglycoprotein endopeptidase like 1provided by HGNC
Primary source
HGNC:HGNC:23075
See related
Ensembl:ENSG00000128694 MIM:619634; AllianceGenome:HGNC:23075
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Qri7; OSGEPL
Summary
Predicted to enable N(6)-L-threonylcarbamoyladenine synthase activity and metal ion binding activity. Predicted to be involved in tRNA threonylcarbamoyladenosine modification. Located in mitochondrion. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal (RPKM 2.6), testis (RPKM 2.5) and 25 other tissues See more
Orthologs
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Genomic context

See OSGEPL1 in Genome Data Viewer
Location:
2q32.2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (189746660..189763198, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (190235923..190252468, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (190611386..190627924, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16851 Neighboring gene uncharacterized LOC105373793 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12172 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16852 Neighboring gene ASNSD1 upstream open reading frame Neighboring gene asparagine synthetase domain containing 1 Neighboring gene ankyrin and armadillo repeat containing Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16853 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:190627447-190628193 Neighboring gene OSGEPL1 antisense RNA 1 Neighboring gene ORMDL sphingolipid biosynthesis regulator 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:190648352-190649238 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16857 Neighboring gene PMS1 homolog 1, mismatch repair system component Neighboring gene glucosamine-phosphate N-acetyltransferase 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-Wide Association Study Identifies Variants in PMS1 Associated with Serum Ferritin in a Chinese Population.
EBI GWAS Catalog

HIV-1 interactions

Replication interactions

Interaction Pubs
Knockdown of O-sialoglycoprotein endopeptidase-like 1 (OSGEPL1) by shRNA library screening inhibits HIV-1 replication in cultured Jurkat T-cells PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial
Names
N6-L-threonylcarbamoyladenine synthase
O-sialoglycoprotein endopeptidase-like protein 1
OSGEP-like protein 1
probable O-sialoglycoprotein endopeptidase 2
probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial
probable tRNA threonylcarbamoyladenosine biosynthesis protein OSGEPL1
putative sialoglycoprotease type 2
t(6)A synthase
t(6)A37 threonylcarbamoyladenosine biosynthesis protein OSGEPL1
tRNA threonylcarbamoyladenosine biosynthesis protein OSGEPL1
NP_001341276.2
NP_001363006.1
NP_001363007.1
NP_001363008.1
NP_001363009.1
NP_001363010.1
NP_001363011.1
NP_001363012.1
NP_001363013.1
NP_001363014.1
NP_001363017.1
NP_001363021.1
NP_001363023.1
NP_001363024.1
NP_001363026.1
NP_001363027.1
NP_001363028.1
NP_001363029.1
NP_001363030.1
NP_071748.2
XP_016860165.1
XP_024308807.1
XP_024308808.1
XP_024308809.1
XP_047301364.1
XP_054199314.1
XP_054199315.1
XP_054199316.1
XP_054199317.1
XP_054199318.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001354347.2NP_001341276.2  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' and 3' UTRs compared to variant 1. Variants 1, 2, and 4-10 all encode the same isoform (1).
    Source sequence(s)
    AC013468
    Consensus CDS
    CCDS46472.1
    UniProtKB/Swiss-Prot
    Q96EV9, Q96NH5, Q9H4B0
    Conserved Domains (1) summary
    COG0533
    Location:38377
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  2. NM_001376077.1NP_001363006.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4), as well as variants 1, 2, and 5-10, encodes isoform 1.
    Source sequence(s)
    AC013468
    Consensus CDS
    CCDS46472.1
    UniProtKB/Swiss-Prot
    Q96EV9, Q96NH5, Q9H4B0
    Conserved Domains (1) summary
    COG0533
    Location:38377
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  3. NM_001376078.1NP_001363007.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5), as well as variants 1, 2, 4, and 6-10, encodes isoform 1.
    Source sequence(s)
    AC013468
    Consensus CDS
    CCDS46472.1
    UniProtKB/Swiss-Prot
    Q96EV9, Q96NH5, Q9H4B0
    Conserved Domains (1) summary
    COG0533
    Location:38377
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  4. NM_001376079.1NP_001363008.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6), as well as variants 1, 2, 4, 5, and 7-10, encodes isoform 1.
    Source sequence(s)
    AC013468
    Consensus CDS
    CCDS46472.1
    UniProtKB/Swiss-Prot
    Q96EV9, Q96NH5, Q9H4B0
    Conserved Domains (1) summary
    COG0533
    Location:38377
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  5. NM_001376080.1NP_001363009.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7), as well as variants 1, 2, 4-6, and 8-10, encodes isoform 1.
    Source sequence(s)
    AC013468
    Consensus CDS
    CCDS46472.1
    UniProtKB/Swiss-Prot
    Q96EV9, Q96NH5, Q9H4B0
    Conserved Domains (1) summary
    COG0533
    Location:38377
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  6. NM_001376081.1NP_001363010.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8), as well as variants 1, 2, 4-7, 9, and 10, encodes isoform 1.
    Source sequence(s)
    AC013468
    Consensus CDS
    CCDS46472.1
    UniProtKB/Swiss-Prot
    Q96EV9, Q96NH5, Q9H4B0
    Conserved Domains (1) summary
    COG0533
    Location:38377
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  7. NM_001376082.1NP_001363011.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (9) represents the longest transcript and encodes the longest isoform (1). Variants 1, 2, and 4-10 all encode the same isoform (1).
    Source sequence(s)
    AC013468
    Consensus CDS
    CCDS46472.1
    UniProtKB/Swiss-Prot
    Q96EV9, Q96NH5, Q9H4B0
    Conserved Domains (1) summary
    COG0533
    Location:38377
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  8. NM_001376083.1NP_001363012.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (10), as well as variants 1, 2, and 4-9, encodes isoform 1.
    Source sequence(s)
    AC013468
    Consensus CDS
    CCDS46472.1
    UniProtKB/Swiss-Prot
    Q96EV9, Q96NH5, Q9H4B0
    Conserved Domains (1) summary
    COG0533
    Location:38377
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  9. NM_001376084.1NP_001363013.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (11), as well as variants 12-16, encodes isoform 3.
    Source sequence(s)
    AC013468
    Conserved Domains (1) summary
    COG0533
    Location:1230
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  10. NM_001376085.1NP_001363014.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (12), as well as variants 11 and 13-16, encodes isoform 3.
    Source sequence(s)
    AC013468
    Conserved Domains (1) summary
    COG0533
    Location:1230
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  11. NM_001376088.1NP_001363017.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (13), as well as variants 11, 12, and 14-16, encodes isoform 3.
    Source sequence(s)
    AC013468
    Conserved Domains (1) summary
    COG0533
    Location:1230
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  12. NM_001376092.1NP_001363021.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (14), as well as variants 11-13, 15, and 16, encodes isoform 3.
    Source sequence(s)
    AC013468
    Conserved Domains (1) summary
    COG0533
    Location:1230
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  13. NM_001376094.1NP_001363023.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (15), as well as variants 11-14 and 16, encodes isoform 3.
    Source sequence(s)
    AC013468
    Conserved Domains (1) summary
    COG0533
    Location:1230
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  14. NM_001376095.1NP_001363024.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (16), as well as variants 11-15, encodes isoform 3.
    Source sequence(s)
    AC013468
    Conserved Domains (1) summary
    COG0533
    Location:1230
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  15. NM_001376097.1NP_001363026.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC013468
    Conserved Domains (1) summary
    COG0533
    Location:38377
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  16. NM_001376098.1NP_001363027.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC013468
    Conserved Domains (1) summary
    COG0533
    Location:38377
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  17. NM_001376099.1NP_001363028.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC013468
    Conserved Domains (1) summary
    COG0533
    Location:38368
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  18. NM_001376100.1NP_001363029.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC013468
    Conserved Domains (1) summary
    TIGR03723
    Location:39364
    T6A_TsaD_YgjD; tRNA threonylcarbamoyl adenosine modification protein TsaD
  19. NM_001376101.1NP_001363030.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 8

    Status: VALIDATED

    Source sequence(s)
    AC013468
    Conserved Domains (1) summary
    COG0533
    Location:1178
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  20. NM_022353.3NP_071748.2  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 1

    See identical proteins and their annotated locations for NP_071748.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AC013468, BC011904
    Consensus CDS
    CCDS46472.1
    UniProtKB/Swiss-Prot
    Q96EV9, Q96NH5, Q9H4B0
    Related
    ENSP00000264151.5, ENST00000264151.10
    Conserved Domains (1) summary
    COG0533
    Location:38377
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]

RNA

  1. NR_148883.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' and 3' ends and lacks an alternate internal exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AC013468
    Related
    ENST00000519810.5
  2. NR_164768.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013468
  3. NR_164769.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013468

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    189746660..189763198 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024453040.2XP_024308808.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform X1

    Conserved Domains (1) summary
    COG0533
    Location:49388
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  2. XM_024453041.2XP_024308809.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform X1

    Conserved Domains (1) summary
    COG0533
    Location:49388
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  3. XM_024453039.2XP_024308807.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform X1

    Conserved Domains (1) summary
    COG0533
    Location:49388
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  4. XM_017004676.2XP_016860165.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform X2

    UniProtKB/Swiss-Prot
    Q96EV9, Q96NH5, Q9H4B0
    Conserved Domains (1) summary
    COG0533
    Location:38377
    TsaD; tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]
  5. XM_047445408.1XP_047301364.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform X3

RNA

  1. XR_002959323.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    190235923..190252468 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054343339.1XP_054199314.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform X1

  2. XM_054343341.1XP_054199316.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform X1

  3. XM_054343340.1XP_054199315.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform X1

  4. XM_054343342.1XP_054199317.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform X2

    UniProtKB/Swiss-Prot
    Q96EV9, Q96NH5, Q9H4B0
  5. XM_054343343.1XP_054199318.1  tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform X3

RNA

  1. XR_008486485.1 RNA Sequence