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SNHG6 small nucleolar RNA host gene 6 [ Homo sapiens (human) ]

Gene ID: 641638, updated on 15-Mar-2020

Summary

Official Symbol
SNHG6provided by HGNC
Official Full Name
small nucleolar RNA host gene 6provided by HGNC
Primary source
HGNC:HGNC:32965
See related
Ensembl:ENSG00000245910 MIM:612215
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
U87HG; HBII-276HG; NCRNA00058
Expression
Ubiquitous expression in ovary (RPKM 124.4), bone marrow (RPKM 84.3) and 25 other tissues See more

Genomic context

See SNHG6 in Genome Data Viewer
Location:
8q13.1; 8q13
Exon count:
4
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 8 NC_000008.11 (66921690..66925541, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (67834165..67837778, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene C8orf44-SGK3 readthrough Neighboring gene chromosome 8 open reading frame 44 Neighboring gene serum/glucocorticoid regulated kinase family member 3 Neighboring gene pituitary tumor-transforming 3, pseudogene Neighboring gene minichromosome maintenance domain containing 2 Neighboring gene small nucleolar RNA, C/D box 87 Neighboring gene transcription factor 24 Neighboring gene pre-mRNA processing factor 3 pseudogene Neighboring gene protein phosphatase 1 regulatory subunit 42

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • HBII-276 host
  • U87 host
  • small nucleolar RNA host gene (non-protein coding) 6

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002599.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA035428, AY264285, BX110970
  2. NR_152598.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011031
    Related
    ENST00000520348.5
  3. NR_152599.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA035428, BU564145, BX110970
  4. NR_152600.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011031

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p13 Primary Assembly

    Range
    66921690..66925541 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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